Rorug02G0037300

Serine aminopeptidase, S33

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
2929665 .. 2929988
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0037300.1

Sequence Viewer

Length: 324 bp
ATGAACAAAAAATCATTTAACCTAAAAAGCTCTGGCAAAGAAGAAGAAAAGCGGCACAGGCATCCGCATAAGCTTCAGACGATTCGGCACTGTGAAAAAGACTTGAAAGTGAAAACAAGCAGTGGGAAGGTGAAGAAGAATCATAGCACTCTTGTTCGGTGCGGCAGGAGCTTGAAGGCGGAGGAGCTTTATCGTAAGTCCCTCTACTTTTGTAGCTTTGAAATTAACCAGTCCATTCATAAGCCCGAGGAGAAATGGGATGCTTTTGTTGTCCGCGCCCTCAATCTCAGCGATTTCTCTTCTCATCGTCATCATCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.67

Weight (kDa)

9.97

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 5 cut(s) 52, 65, 162, 179, 274
AcuI CTGAAG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 106, 175, 221
AluBI AGCT 5 cut(s) 30, 73, 171, 187, 216
AluI AGCT 5 cut(s) 30, 73, 171, 187, 216
Ama87I CYCGRG 1 cut(s) 245
AspLEI GCGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 245
BisI GCNGC 2 cut(s) 53, 163
BlsI GCNGC 2 cut(s) 54, 164
BmeT110I CYCGRG 1 cut(s) 245
BmsI GCATC 2 cut(s) 70, 250
BsaJI CCNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 61, 265, 313
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 2 cut(s) 197, 263
Bsh1236I CGCG 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 245
BspACI CCGC 5 cut(s) 52, 65, 162, 179, 274
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 61, 265, 313
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 278
BstMWI GCNNNNNNNGC 2 cut(s) 58, 168
BstUI CGCG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 61, 265, 313
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 88, 127
CfoI GCGC 1 cut(s) 278
CviJI RGCY 6 cut(s) 30, 73, 171, 187, 216, 244
CviKI_1 RGCY 6 cut(s) 30, 73, 171, 187, 216, 244
DdeI CTNAG 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
EciI GGCGGA 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 245
FaiI YATR 3 cut(s) 69, 144, 240
FaqI GGGAC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 53, 163
FokI GGATG 3 cut(s) 48, 272, 300
Fsp4HI GCNGC 2 cut(s) 53, 163
GlaI GCGC 1 cut(s) 277
GluI GCNGC 2 cut(s) 53, 163
HhaI GCGC 1 cut(s) 278
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 82, 139
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 121, 169
HpyCH4III ACNGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 168
HpyF3I CTNAG 1 cut(s) 287
HspAI GCGC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 168, 184
LpnPI CCDG 4 cut(s) 18, 43, 151, 242
LweI GCATC 2 cut(s) 70, 250
MboII GAAGA 5 cut(s) 53, 56, 145, 148, 291
MluCI AATT 1 cut(s) 222
MnlI CCTC 4 cut(s) 175, 212, 241, 290
MseI TTAA 2 cut(s) 18, 225
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 58, 168
PfeI GAWTC 2 cut(s) 82, 139
PkrI GCNGC 2 cut(s) 54, 164
SaqAI TTAA 2 cut(s) 18, 225
SatI GCNGC 2 cut(s) 53, 163
SetI ASST 7 cut(s) 24, 32, 75, 132, 173, 189, 218
SfaNI GCATC 2 cut(s) 70, 250
Sse9I AATT 1 cut(s) 222
SsiI CCGC 5 cut(s) 52, 65, 162, 179, 274
TaaI ACNGT 1 cut(s) 92
TasI AATT 1 cut(s) 222
TauI GCSGC 2 cut(s) 55, 165
TfiI GAWTC 2 cut(s) 82, 139
Tru1I TTAA 2 cut(s) 18, 225
Tru9I TTAA 2 cut(s) 18, 225
TscAI CASTG 2 cut(s) 95, 127
TspDTI ATGAA 2 cut(s) 17, 227
TspRI CASTG 2 cut(s) 95, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.