Rh2BG084300

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000515
Physical Location & Seq
Reverse (-)
6558257 .. 6558660
404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG084300.1

Sequence Viewer

Length: 315 bp
ATGGATTCTCTGCTTGTAGGAGGTGTTGCTTACCGTGTGACTGAAGAAAGTCTGATGGATCGCCTAAGTACTGATATGCAAGAATCATGCCTTCAGATTGGCAAAGAATGCCAGGTGTTGACAGTCCATGGATCTGATGATGAGGTCATCCCTGTGGACGATGCAGTGGAGTTTTCCAAGATAATAACTAACCATAAATTACATATTGTTCGAGGAGCTAATCATTGTTACACCTCGCATCAAGCTGAGTTAGCTTCAGTTGTGGTGGACTACATAAAGACCGCTCTGCAGCAGGACAAGACTACTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

104

Amino Acids

11.49

Weight (kDa)

4.84

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 284
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 66, 139
AcuI CTGAAG 3 cut(s) 63, 77, 240
AfaI GTAC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 3 cut(s) 218, 245, 254
AluI AGCT 3 cut(s) 218, 245, 254
AlwI GGATC 2 cut(s) 66, 139
ApeKI GCWGC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 313
BfmI CTRYAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 151, 247
BsaJI CCNNGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 58, 131
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 291
BspPI GGATC 2 cut(s) 66, 139
BsrBI CCGCTC 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 58, 131
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 35, 124
BstAPI GCANNNNNTGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 65, 246
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 2 cut(s) 61, 134
BstMBI GATC 2 cut(s) 58, 131
BstMWI GCNNNNNNNGC 2 cut(s) 108, 251
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Csp6I GTAC 1 cut(s) 69
CviAII CATG 2 cut(s) 87, 128
CviJI RGCY 3 cut(s) 218, 245, 254
CviKI_1 RGCY 3 cut(s) 218, 245, 254
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 2 cut(s) 65, 246
DpnI GATC 2 cut(s) 60, 133
DpnII GATC 2 cut(s) 58, 131
Eco130I CCWWGG 1 cut(s) 127
Eco57I CTGAAG 3 cut(s) 63, 77, 240
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 90, 131
FaiI YATR 6 cut(s) 77, 88, 129, 195, 204, 275
FatI CATG 2 cut(s) 86, 127
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 313
GluI GCNGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 90, 131
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 2 cut(s) 5, 83
Hpy166II GTNNAC 3 cut(s) 120, 157, 268
Hpy188I TCNGA 3 cut(s) 54, 96, 136
Hpy8I GTNNAC 3 cut(s) 120, 157, 268
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 35, 124
HpyCH4V TGCA 3 cut(s) 79, 164, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 251
HpyF3I CTNAG 2 cut(s) 65, 246
Hsp92II CATG 2 cut(s) 90, 131
Kzo9I GATC 2 cut(s) 58, 131
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 98, 125, 165, 278
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 151, 247
MaeI CTAG 1 cut(s) 313
MaeIII GTNAC 2 cut(s) 37, 227
MalI GATC 2 cut(s) 60, 133
MbiI CCGCTC 1 cut(s) 284
MboI GATC 2 cut(s) 58, 131
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 131
MluCI AATT 1 cut(s) 197
MnlI CCTC 4 cut(s) 14, 136, 206, 244
MslI CAYNNNNRTG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 108, 251
NcoI CCATGG 1 cut(s) 127
NdeII GATC 2 cut(s) 58, 131
NlaIII CATG 2 cut(s) 90, 131
NmuCI GTSAC 1 cut(s) 37
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 5, 83
PkrI GCNGC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PstI CTGCAG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 2 cut(s) 58, 131
ScaI AGTACT 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 113
SetI ASST 7 cut(s) 25, 117, 147, 220, 236, 247, 256
SfaNI GCATC 2 cut(s) 151, 247
SfcI CTRYAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 282
SspMI CTAG 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 35, 124
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 2 cut(s) 5, 83
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 1 cut(s) 171
XspI CTAG 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.