RLG00000016413

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000515
Physical Location & Seq
Reverse (-)
6444402 .. 6446139
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016413

Sequence Viewer

Length: 810 bp
ATGGCAGAGGCAGCCCAGAACCCAGTGAGCCAGCTTGAGAAAGTAGTTATAACCAACAAACATGGTGAAAAGCTTGTGGGATTATTGCATGAAACCAGTTCTAAAGAGCTTGTGATCTTGTGCCATGGAGCTCGATCCCACAAGGGAGATAATATTATGACTAAACTTGCTCTTGCATTGGAAAAGGAAGGAATTAGTGCTTTCCGTTTCGATTTTGCTGGAAATGGACAAAGTGAAGGCACCTTTCAGTTTGGTCACTACTGGAGAGAGGTTGATGACTTGCATGCTGTAGTCCAACACTTCTCTGGGACAAACCATACAGTAAATGCAATTCTTGGCCACAGTAAAGGAGGGGATGAGGTGCTTCTGTATGCTTCTAAGTATGGTGACGTTCGCACGGTTGTCAATGTTTCTGGACGTTATGATCTGAATGGAGGCCTTGAGCTACGGTTAGGGAAAAACTTTATGGAAAGGATCAAGAAGCAAGGATACTTGGATATTAAGGACAAGACAGGAACTTTCAATTGTCGTGTGATGGAGGAAAGTTTGCTGGATCGCATGAATACTAATATGCATGAATCATGCCTTAAGATTGCCAAAGATTGCCGTGTTTTGACAGTCCATGGATCTGATGACGACGTGATTCCCGTTGGAGATGCACTGGAGTTTGCCAAGATAATACCTAACCACAAGTTACATGTTATACAAGGAGCTGATCATTATTACAGCGATCACCAAGCTCAGTTAGCGTCAACTATTTTGGAATTCCTTAAGGCAGCTTTCCTTGAGGACAAGACTACTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

270

Amino Acids

29.88

Weight (kDa)

6.19

Isoelectric Point (pI)

24.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 33 - 159 8.7e-14 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 239
AclWI GGATC 4 cut(s) 129, 482, 561, 634
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 764
AflII CTTAAG 2 cut(s) 587, 770
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 1 cut(s) 523
AjiI CACGTC 1 cut(s) 640
AluBI AGCT 8 cut(s) 34, 73, 109, 131, 445, 713, 740, 779
AluI AGCT 8 cut(s) 34, 73, 109, 131, 445, 713, 740, 779
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 4 cut(s) 129, 482, 561, 634
AoxI GGCC 2 cut(s) 337, 436
ApeKI GCWGC 2 cut(s) 11, 776
ApoI RAATTY 1 cut(s) 764
AsuHPI GGTGA 3 cut(s) 77, 398, 725
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 23, 788
BccI CCATC 1 cut(s) 529
BceAI ACGGC 1 cut(s) 591
BciVI GTATCC 1 cut(s) 482
BclI TGATCA 1 cut(s) 715
BfaI CTAG 1 cut(s) 808
BfmI CTRYAG 1 cut(s) 288
BfrI CTTAAG 2 cut(s) 587, 770
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 2 cut(s) 12, 777
BlsI GCNGC 2 cut(s) 13, 778
BmgBI CACGTC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 17
BpmI CTGGAG 2 cut(s) 283, 683
BpuEI CTTGAG 3 cut(s) 56, 461, 806
BsaJI CCNNGG 2 cut(s) 124, 622
Bse1I ACTGG 4 cut(s) 23, 96, 266, 666
BseDI CCNNGG 2 cut(s) 124, 622
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 4 cut(s) 23, 96, 266, 666
BseXI GCAGC 2 cut(s) 23, 788
BshFI GGCC 2 cut(s) 339, 438
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 339, 438
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
Bsp19I CCATGG 2 cut(s) 124, 622
BspANI GGCC 2 cut(s) 339, 438
BspCNI CTCAG 1 cut(s) 754
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 4 cut(s) 129, 482, 561, 634
BspT107I GGYRCC 1 cut(s) 239
BspTI CTTAAG 2 cut(s) 587, 770
BsrI ACTGG 4 cut(s) 23, 96, 266, 666
BssECI CCNNGG 2 cut(s) 124, 622
BssMI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
BssT1I CCWWGG 2 cut(s) 124, 622
Bst4CI ACNGT 5 cut(s) 322, 344, 400, 450, 619
BstAFI CTTAAG 2 cut(s) 587, 770
BstC8I GCNNGC 2 cut(s) 32, 285
BstDEI CTNAG 2 cut(s) 378, 741
BstDSI CCRYGG 2 cut(s) 124, 622
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 8 cut(s) 117, 137, 427, 477, 556, 629, 718, 733
BstMBI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
BstMWI GCNNNNNNNGC 2 cut(s) 11, 746
BstNSI RCATGY 2 cut(s) 287, 701
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 23, 788
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 2 cut(s) 339, 438
BtgI CCRYGG 2 cut(s) 124, 622
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 30, 659
Cac8I GCNNGC 2 cut(s) 32, 285
CseI GACGC 1 cut(s) 738
CviAII CATG 9 cut(s) 62, 89, 125, 284, 559, 575, 582, 623, 698
DdeI CTNAG 2 cut(s) 378, 741
DpnI GATC 8 cut(s) 116, 136, 426, 476, 555, 628, 717, 732
DpnII GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
EaeI YGGCCR 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 124, 622
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 124, 622
EcoT22I ATGCAT 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 124, 622
FaeI CATG 9 cut(s) 65, 92, 128, 287, 562, 578, 585, 626, 701
FaqI GGGAC 1 cut(s) 322
FatI CATG 9 cut(s) 61, 88, 124, 283, 558, 574, 581, 622, 697
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 2 cut(s) 12, 777
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 12, 777
FspBI CTAG 1 cut(s) 808
GluI GCNGC 2 cut(s) 12, 777
GsuI CTGGAG 2 cut(s) 283, 683
HaeIII GGCC 2 cut(s) 339, 438
HgaI GACGC 1 cut(s) 738
Hin1II CATG 9 cut(s) 65, 92, 128, 287, 562, 578, 585, 626, 701
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 578, 643
HphI GGTGA 3 cut(s) 77, 398, 725
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 2 cut(s) 429, 631
Hpy188III TCNNGA 2 cut(s) 414, 478
Hpy8I GTNNAC 1 cut(s) 753
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 2 cut(s) 182, 230
HpyCH4III ACNGT 5 cut(s) 322, 344, 400, 450, 619
HpyCH4IV ACGT 3 cut(s) 390, 418, 639
HpyCH4V TGCA 6 cut(s) 88, 176, 283, 329, 574, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 746
HpyF3I CTNAG 2 cut(s) 378, 741
HpySE526I ACGT 3 cut(s) 390, 418, 639
Hsp92II CATG 9 cut(s) 65, 92, 128, 287, 562, 578, 585, 626, 701
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
LmnI GCTCC 2 cut(s) 128, 710
Lsp1109I GCAGC 2 cut(s) 23, 788
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 808
MaeII ACGT 3 cut(s) 390, 418, 639
MaeIII GTNAC 3 cut(s) 254, 386, 693
MalI GATC 8 cut(s) 116, 136, 426, 476, 555, 628, 717, 732
MboI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
MfeI CAATTG 1 cut(s) 523
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 4 cut(s) 192, 330, 523, 764
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 319, 631
MnlI CCTC 6 cut(s) 262, 344, 352, 428, 532, 781
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 576
MscI TGGCCA 1 cut(s) 339
MseI TTAA 3 cut(s) 501, 588, 771
Msp20I TGGCCA 1 cut(s) 339
MspCI CTTAAG 2 cut(s) 587, 770
MunI CAATTG 1 cut(s) 523
MwoI GCNNNNNNNGC 2 cut(s) 11, 746
NcoI CCATGG 2 cut(s) 124, 622
NdeII GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
NlaIII CATG 9 cut(s) 65, 92, 128, 287, 562, 578, 585, 626, 701
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 254, 386
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 2 cut(s) 287, 701
PaeI GCATGC 1 cut(s) 287
PceI AGGCCT 1 cut(s) 438
PciI ACATGT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PfeI GAWTC 2 cut(s) 578, 643
PkrI GCNGC 2 cut(s) 13, 778
PscI ACATGT 1 cut(s) 697
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 626
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 501, 588, 771
SatI GCNGC 2 cut(s) 12, 777
Sau3AI GATC 8 cut(s) 114, 134, 424, 474, 553, 626, 715, 730
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 288
SmlI CTYRAG 5 cut(s) 35, 440, 587, 770, 785
SmoI CTYRAG 5 cut(s) 35, 440, 587, 770, 785
SphI GCATGC 1 cut(s) 287
Sse9I AATT 4 cut(s) 192, 330, 523, 764
SseBI AGGCCT 1 cut(s) 438
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 808
SstI GAGCTC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 438
StyI CCWWGG 2 cut(s) 124, 622
TaaI ACNGT 5 cut(s) 322, 344, 400, 450, 619
TaiI ACGT 3 cut(s) 393, 421, 642
TaqI TCGA 2 cut(s) 133, 210
TasI AATT 4 cut(s) 192, 330, 523, 764
TfiI GAWTC 2 cut(s) 578, 643
Tru1I TTAA 3 cut(s) 501, 588, 771
Tru9I TTAA 3 cut(s) 501, 588, 771
TscAI CASTG 2 cut(s) 30, 666
TseFI GTSAC 2 cut(s) 254, 386
TseI GCWGC 2 cut(s) 11, 776
Tsp45I GTSAC 2 cut(s) 254, 386
TspDTI ATGAA 3 cut(s) 105, 575, 591
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 30, 666
Vha464I CTTAAG 2 cut(s) 587, 770
XapI RAATTY 1 cut(s) 764
XceI RCATGY 2 cut(s) 287, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 808
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.