Rroxscaffold_2G00148020

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000515
Physical Location & Seq
Forward (+)
85687207 .. 85689651
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00148020.1

Sequence Viewer

Length: 813 bp
ATGGCAGAGGCAGCCCAGAACCCTGTGAGCCAGCCAGAGAAAGTAGTTATAACCAACAAACATGGTGAAAAGCTTGTGGGATTATTGCATGAAACCAGTTCTAAAGAGCTTGTGATCTTGTGCCATGGAGCTCGATCCCACAAGGGAGATAATATTATGACTAAACTTGCTCTTGCATTGGAAAAGGAAGGAATTAGTGCTTTCCGTTTCGATTTTGCTGGAAATGGAGAAAGTGAAGGCACCTTTCAGTTTGGTCACTACTGGAGAGAGGTTGATGACTTGCATGCTGTAGTCCAACACTTCTCTGGGACAAACCATACAGTAAGTGCAATTCTTGGCCACAGTAAAGGAGGGGATGAGGTGCTTCTGTATGCTTCTAAGTATGGTGACGTTCGCACGGTTGTCAATGTTTCTGGACGTTATGATCTGAATGGAGGCCTTGAGCTACGGTTAGGGAAAAACTTTATGGAAAGGATCAAGAAGCAAGGATACTTGGATATTAAGGATAAGACAGGTGGAACTTTCGATTGCCGTGTGACTGAGGAAAGTTTGCTGGATCGCATGAATACTAATATGCATGAATCATGCCTTAAGATTGCCAAAGATTGCCGTGTTTTGACAGTCCATGGATCTGATGACGACGTGATCCCCGTTGGAGATGCACTGGAGTTTGCCAAGATAATACCTAACCACAAGTTACATGTTATACAAGGAGCTGATCATTATTACAGCGCTCACCAAGCTGAGTTAGCGTCAACTATTTTTGAATTCCTTAACGCAGCTTTCCAAGAGGACAAGACTACTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

270

Amino Acids

29.86

Weight (kDa)

5.9

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 33 - 164 9.6e-14 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 239
AclWI GGATC 5 cut(s) 129, 482, 564, 637, 640
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 767
AfeI AGCGCT 1 cut(s) 733
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 1 cut(s) 767
AjiI CACGTC 1 cut(s) 643
AluBI AGCT 7 cut(s) 73, 109, 131, 445, 716, 743, 782
AluI AGCT 7 cut(s) 73, 109, 131, 445, 716, 743, 782
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 5 cut(s) 129, 482, 564, 637, 640
Aor51HI AGCGCT 1 cut(s) 733
AoxI GGCC 2 cut(s) 337, 436
ApeKI GCWGC 2 cut(s) 11, 779
ApoI RAATTY 1 cut(s) 767
AspLEI GCGC 1 cut(s) 734
AsuHPI GGTGA 3 cut(s) 77, 398, 728
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 23, 791
BceAI ACGGC 2 cut(s) 516, 594
BciVI GTATCC 1 cut(s) 482
BclI TGATCA 1 cut(s) 718
BfaI CTAG 1 cut(s) 811
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 735
BfrI CTTAAG 1 cut(s) 590
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 2 cut(s) 12, 780
BlsI GCNGC 2 cut(s) 13, 781
BmgBI CACGTC 1 cut(s) 643
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 649
BpmI CTGGAG 2 cut(s) 283, 686
BpuEI CTTGAG 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 124, 625
Bse1I ACTGG 3 cut(s) 96, 266, 669
BseDI CCNNGG 2 cut(s) 124, 625
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 531, 735
BseNI ACTGG 3 cut(s) 96, 266, 669
BseXI GCAGC 2 cut(s) 23, 791
BshFI GGCC 2 cut(s) 339, 438
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 339, 438
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
Bsp19I CCATGG 2 cut(s) 124, 625
BspANI GGCC 2 cut(s) 339, 438
BspCNI CTCAG 2 cut(s) 532, 736
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 5 cut(s) 129, 482, 564, 637, 640
BspT107I GGYRCC 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 590
BsrI ACTGG 3 cut(s) 96, 266, 669
BssECI CCNNGG 2 cut(s) 124, 625
BssMI GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
BssT1I CCWWGG 2 cut(s) 124, 625
Bst4CI ACNGT 5 cut(s) 322, 344, 400, 450, 622
BstAFI CTTAAG 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 32, 285
BstDEI CTNAG 3 cut(s) 378, 540, 744
BstDSI CCRYGG 2 cut(s) 124, 625
BstF5I GGATG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 8 cut(s) 117, 137, 427, 477, 559, 632, 648, 721
BstMBI GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
BstMWI GCNNNNNNNGC 3 cut(s) 11, 740, 749
BstNSI RCATGY 2 cut(s) 287, 704
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 23, 791
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 2 cut(s) 339, 438
BtgI CCRYGG 2 cut(s) 124, 625
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 662
Cac8I GCNNGC 2 cut(s) 32, 285
CfoI GCGC 1 cut(s) 734
CseI GACGC 1 cut(s) 741
CviAII CATG 9 cut(s) 62, 89, 125, 284, 562, 578, 585, 626, 701
DdeI CTNAG 3 cut(s) 378, 540, 744
DpnI GATC 8 cut(s) 116, 136, 426, 476, 558, 631, 647, 720
DpnII GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
EaeI YGGCCR 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 124, 625
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 133
Eco47III AGCGCT 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 767
EcoT14I CCWWGG 2 cut(s) 124, 625
EcoT22I ATGCAT 1 cut(s) 579
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 124, 625
FaeI CATG 9 cut(s) 65, 92, 128, 287, 565, 581, 588, 629, 704
FaqI GGGAC 1 cut(s) 322
FatI CATG 9 cut(s) 61, 88, 124, 283, 561, 577, 584, 625, 700
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 2 cut(s) 12, 780
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 12, 780
FspBI CTAG 1 cut(s) 811
GlaI GCGC 1 cut(s) 733
GluI GCNGC 2 cut(s) 12, 780
GsuI CTGGAG 2 cut(s) 283, 686
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 2 cut(s) 339, 438
HgaI GACGC 1 cut(s) 741
HhaI GCGC 1 cut(s) 734
Hin1II CATG 9 cut(s) 65, 92, 128, 287, 565, 581, 588, 629, 704
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 581
HphI GGTGA 3 cut(s) 77, 398, 728
Hpy166II GTNNAC 1 cut(s) 756
Hpy188I TCNGA 2 cut(s) 429, 634
Hpy188III TCNNGA 2 cut(s) 414, 478
Hpy8I GTNNAC 1 cut(s) 756
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 2 cut(s) 182, 230
HpyCH4III ACNGT 5 cut(s) 322, 344, 400, 450, 622
HpyCH4IV ACGT 3 cut(s) 390, 418, 642
HpyCH4V TGCA 6 cut(s) 88, 176, 283, 329, 577, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 740, 749
HpyF3I CTNAG 3 cut(s) 378, 540, 744
HpySE526I ACGT 3 cut(s) 390, 418, 642
Hsp92II CATG 9 cut(s) 65, 92, 128, 287, 565, 581, 588, 629, 704
HspAI GCGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
LmnI GCTCC 2 cut(s) 128, 713
Lsp1109I GCAGC 2 cut(s) 23, 791
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 811
MaeII ACGT 3 cut(s) 390, 418, 642
MaeIII GTNAC 4 cut(s) 254, 386, 535, 696
MalI GATC 8 cut(s) 116, 136, 426, 476, 558, 631, 647, 720
MboI GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 3 cut(s) 192, 330, 767
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 319, 634
MnlI CCTC 6 cut(s) 262, 344, 352, 428, 535, 784
Mox20I TGGCCA 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 579
MscI TGGCCA 1 cut(s) 339
MseI TTAA 3 cut(s) 501, 591, 774
Msp20I TGGCCA 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 590
MwoI GCNNNNNNNGC 3 cut(s) 11, 740, 749
NcoI CCATGG 2 cut(s) 124, 625
NdeII GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
NlaIII CATG 9 cut(s) 65, 92, 128, 287, 565, 581, 588, 629, 704
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 254, 386, 535
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 2 cut(s) 287, 704
PaeI GCATGC 1 cut(s) 287
PceI AGGCCT 1 cut(s) 438
PciI ACATGT 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 2 cut(s) 13, 781
PscI ACATGT 1 cut(s) 700
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 629
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 501, 591, 774
SatI GCNGC 2 cut(s) 12, 780
Sau3AI GATC 8 cut(s) 114, 134, 424, 474, 556, 629, 645, 718
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 440, 590
SmoI CTYRAG 2 cut(s) 440, 590
SphI GCATGC 1 cut(s) 287
Sse9I AATT 3 cut(s) 192, 330, 767
SseBI AGGCCT 1 cut(s) 438
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 811
SstI GAGCTC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 438
StyI CCWWGG 2 cut(s) 124, 625
TaaI ACNGT 5 cut(s) 322, 344, 400, 450, 622
TaiI ACGT 3 cut(s) 393, 421, 645
TaqI TCGA 3 cut(s) 133, 210, 525
TasI AATT 3 cut(s) 192, 330, 767
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 3 cut(s) 501, 591, 774
Tru9I TTAA 3 cut(s) 501, 591, 774
TscAI CASTG 1 cut(s) 669
TseFI GTSAC 3 cut(s) 254, 386, 535
TseI GCWGC 2 cut(s) 11, 779
Tsp45I GTSAC 3 cut(s) 254, 386, 535
TspDTI ATGAA 3 cut(s) 105, 578, 594
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 669
Vha464I CTTAAG 1 cut(s) 590
XapI RAATTY 1 cut(s) 767
XceI RCATGY 2 cut(s) 287, 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 811
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.