Rh2BG084500

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000515
Physical Location & Seq
Reverse (-)
6584039 .. 6585796
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG084500.1

Sequence Viewer

Length: 474 bp
ATGGCAGAGGCTGCACAGATGCTAGGAGGCGGTGATGTGCTCCTGTATGCTTCAAAGTATCATGACATTCCTATGGTTGTCGAAGCTTCTGCACGCTATGACCTAAAGAAAGGCATTGAAGGACGCCTGGGGAAAGACTTTATGGAGAAGATCAAAAAGGAAGGATTCGTTGATATTGGAAGTCCTAAATTTAGGGTGACTGAGGAAAGCTTGATGGACCGCCTAAGCACCGATATGTGTGAATCGTGCCTCAAGATTGACAAAGATTGCCGGGTGCTAATAGTCCATGGATCTGCTGATGAGATCACTCCTGTTGAAGATGCATTTGAGTTTGCCAAGATAATACCTAACCACAAAATACATATTATAGAAGGAGCTGATCATTGTTGCACATCGCATCAGGCCGAGTTAGACACGGTTGTTGTGGACTTCATAAAAGCAGCTCTGCAGCAGGACAAGGCTTCTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

5.09

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 220
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 124
AgsI TTSAA 3 cut(s) 54, 119, 317
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 86, 210, 377, 443
AluI AGCT 4 cut(s) 86, 210, 377, 443
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 3 cut(s) 11, 440, 448
ApoI RAATTY 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 44, 208
AvaII GGWCC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 452, 460
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 272
BfaI CTAG 2 cut(s) 23, 472
BfmI CTRYAG 1 cut(s) 446
BisI GCNGC 3 cut(s) 12, 441, 449
BlsI GCNGC 3 cut(s) 13, 442, 450
Bme1390I CCNGG 2 cut(s) 128, 272
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 128, 272
BmsI GCATC 3 cut(s) 9, 310, 406
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 127, 286
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 127, 286
BseMII CTCAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 452, 460
BsgI GTGCAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 271
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 150, 290, 303, 379
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 2 cut(s) 30, 220
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 450
BspPI GGATC 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 127, 286
BssMI GATC 4 cut(s) 150, 290, 303, 379
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 418
BstACI GRCGYC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 201, 224
BstDSI CCRYGG 1 cut(s) 286
BstKTI GATC 4 cut(s) 153, 293, 306, 382
BstMBI GATC 4 cut(s) 150, 290, 303, 379
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 270
BstSFI CTRYAG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 452, 460
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 1 cut(s) 404
BtgI CCRYGG 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 217
CseI GACGC 1 cut(s) 132
CviAII CATG 2 cut(s) 62, 287
CviJI RGCY 7 cut(s) 11, 86, 210, 377, 404, 443, 461
CviKI_1 RGCY 7 cut(s) 11, 86, 210, 377, 404, 443, 461
DdeI CTNAG 2 cut(s) 201, 224
DpnI GATC 4 cut(s) 152, 292, 305, 381
DpnII GATC 4 cut(s) 150, 290, 303, 379
Eco130I CCWWGG 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 65, 290
FatI CATG 2 cut(s) 61, 286
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 12, 441, 449
Fsp4HI GCNGC 3 cut(s) 12, 441, 449
FspBI CTAG 2 cut(s) 23, 472
GluI GCNGC 3 cut(s) 12, 441, 449
HaeIII GGCC 1 cut(s) 404
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 65, 290
HindIII AAGCTT 2 cut(s) 84, 208
HinfI GANTC 2 cut(s) 165, 242
HpaII CCGG 1 cut(s) 271
HphI GGTGA 2 cut(s) 44, 208
Hpy166II GTNNAC 1 cut(s) 427
Hpy188III TCNNGA 2 cut(s) 62, 253
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 3 cut(s) 113, 155, 365
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 5 cut(s) 14, 92, 323, 390, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 201, 224
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 65, 290
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 150, 290, 303, 379
LmnI GCTCC 2 cut(s) 45, 374
LpnPI CCDG 7 cut(s) 56, 113, 140, 284, 324, 386, 437
Lsp1109I GCAGC 2 cut(s) 452, 460
LweI GCATC 3 cut(s) 9, 310, 406
MaeI CTAG 2 cut(s) 23, 472
MaeIII GTNAC 1 cut(s) 196
MalI GATC 4 cut(s) 152, 292, 305, 381
MboI GATC 4 cut(s) 150, 290, 303, 379
MboII GAAGA 3 cut(s) 160, 329, 456
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 188
MnlI CCTC 3 cut(s) 20, 196, 260
Mph1103I ATGCAT 1 cut(s) 325
MslI CAYNNNNRTG 2 cut(s) 71, 233
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 2 cut(s) 128, 272
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 272
NcoI CCATGG 1 cut(s) 286
NdeII GATC 4 cut(s) 150, 290, 303, 379
NlaIII CATG 2 cut(s) 65, 290
NmeAIII GCCGAG 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 325
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 2 cut(s) 165, 242
PkrI GCNGC 3 cut(s) 13, 442, 450
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 450
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 290
RseI CAYNNNNRTG 2 cut(s) 71, 233
SatI GCNGC 3 cut(s) 12, 441, 449
Sau3AI GATC 4 cut(s) 150, 290, 303, 379
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 128, 272
SduI GDGCHC 1 cut(s) 42
SetI ASST 6 cut(s) 88, 105, 212, 349, 379, 445
SfaNI GCATC 3 cut(s) 9, 310, 406
SfcI CTRYAG 1 cut(s) 446
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 2 cut(s) 71, 233
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 30, 220
SspMI CTAG 2 cut(s) 23, 472
StyD4I CCNGG 2 cut(s) 126, 270
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 188
TfiI GAWTC 2 cut(s) 165, 242
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 11, 440, 448
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 188
XspI CTAG 2 cut(s) 23, 472
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.