Rh2DG082400

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000515
Physical Location & Seq
Reverse (-)
6468770 .. 6470224
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG082400.1

Sequence Viewer

Length: 357 bp
ATGGCAGAGTCTGCTCAAAACCCAGTGGCCCAGCAACAGAAAATCATTGTAACCAACAAACATGGTGAAAAGCTTGTGGGCTTATTACATGACACTGGTTCTGGGGATATTGTCATCTTATGCCATGGTTTTACATCCACCAAGCATGTGATAAAAACATTGCTGGAAAATGCTACTACAGGAGGTGATGTGGTGCTTCTGTATGCTTCTAAGTATCATGACATTCGTACGGTTGTCAATGTTTCTGGACGTTATGATCTGAAGAAAGGCATTGGAGAACGCTTGGGGAAAGACTTTATGGAAATGATCAAGAAGGAAAGCTTCCTTGATATCAAGAATAACACAGGTAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

8.69

Isoelectric Point (pI)

11.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 1 cut(s) 229
AluBI AGCT 2 cut(s) 73, 321
AluI AGCT 2 cut(s) 73, 321
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 77, 197
BclI TGATCA 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 17
BmuI ACTGGG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse1I ACTGG 2 cut(s) 23, 100
Bse3DI GCAATG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 23, 100
BseYI CCCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 29
BsiWI CGTACG 1 cut(s) 227
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 256, 306
Bsp19I CCATGG 1 cut(s) 124
BspANI GGCC 1 cut(s) 29
BspHI TCATGA 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 2 cut(s) 23, 100
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 256, 306
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 2 cut(s) 259, 309
BstMBI GATC 2 cut(s) 256, 306
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 30, 93
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 228
CviAII CATG 5 cut(s) 62, 89, 125, 146, 218
CviJI RGCY 4 cut(s) 29, 73, 81, 321
CviKI_1 RGCY 4 cut(s) 29, 73, 81, 321
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 258, 308
DpnII GATC 2 cut(s) 256, 306
Eco130I CCWWGG 1 cut(s) 124
Eco32I GATATC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 281
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 5 cut(s) 65, 92, 128, 149, 221
FaiI YATR 9 cut(s) 63, 90, 121, 126, 147, 204, 219, 255, 299
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 5 cut(s) 61, 88, 124, 145, 217
FbaI TGATCA 1 cut(s) 306
FokI GGATG 1 cut(s) 121
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 5 cut(s) 65, 92, 128, 149, 221
HindIII AAGCTT 2 cut(s) 71, 319
HinfI GANTC 1 cut(s) 8
HphI GGTGA 2 cut(s) 77, 197
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 4 cut(s) 218, 246, 310, 334
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 5 cut(s) 65, 92, 128, 149, 221
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 256, 306
LpnPI CCDG 8 cut(s) 36, 44, 81, 87, 149, 165, 231, 330
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 258, 308
MboI GATC 2 cut(s) 256, 306
MboII GAAGA 1 cut(s) 274
MluCI AATT 1 cut(s) 349
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 124
NdeII GATC 2 cut(s) 256, 306
NlaIII CATG 5 cut(s) 65, 92, 128, 149, 221
NspI RCATGY 1 cut(s) 149
PagI TCATGA 1 cut(s) 217
Pfl23II CGTACG 1 cut(s) 227
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 30
PspLI CGTACG 1 cut(s) 227
PspPI GGNCC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 256, 306
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 17
SetI ASST 5 cut(s) 75, 187, 253, 323, 349
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 349
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 253
TasI AATT 1 cut(s) 349
TscAI CASTG 2 cut(s) 30, 100
TspRI CASTG 2 cut(s) 30, 100
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.