pycom02g07440

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000515
Physical Location & Seq
Reverse (-)
5214505 .. 5216184
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07440.2

Sequence Viewer

Length: 618 bp
ATGGCAGAAGCTGCGAAAAACCCAGTGGGTCAGCAACAGAAAATCATCGTACCCAACAAACACGGTGAAAAGCTTGTGGGATTGTTACACGAAACCGGTTCCGCGGACCTTGTAATCTTATGTCATGGTTTTCGAGACACCAAGGAAAACTATATTATGGTGAACCTTGCTGTTGCACTGGAAAATGAAGAGATCAGTTCCTTCCGTTTTGACTTTGCCGGAAATGGGGAAAGTGAAGGCACCTTTCAGTTTGGTAACTATCGGAGAGAGGCGGATGACTTGCACTCTGTGGTCAAGTACTTCTCTGGGGCAAAACGTGCACCCAGTGCAATTGTTGGACACAGTAAAGGAGGCGATGCTGTGCTCCTGTATGCTTCTACCTATCATGACATTCGTACCGTTGTCAATGTTTCTGGACGTTATGATCTGAAGAAAGGCATCGAAGAACGCTTGGGGAAAGACTTTATGGAAGTAATCAAGAAGGAAGGGTTCATTGATGTTAAGAATAAGTCAGGAGATGGTAATTATCGTGTGACCGAGGAGAGTTTGATGGATCGCCTAAGTACTGATCCATGCACGAATCATGCCTTCAGATTGACAAAGAATGCCGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

206

Amino Acids

22.77

Weight (kDa)

6.39

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccII CGCG 1 cut(s) 104
AciI CCGC 3 cut(s) 102, 104, 272
AclWI GGATC 2 cut(s) 561, 563
AcuI CTGAAG 2 cut(s) 449, 574
AdeI CACNNNGTG 2 cut(s) 289, 326
AfaI GTAC 4 cut(s) 51, 299, 397, 565
AfiI CCNNNNNNNGG 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 95
AluBI AGCT 2 cut(s) 11, 73
AluI AGCT 2 cut(s) 11, 73
Alw21I GWGCWC 2 cut(s) 322, 366
Alw26I GTCTC 1 cut(s) 129
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 2 cut(s) 561, 563
AlwNI CAGNNNCTG 1 cut(s) 11
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 11
AsiGI ACCGGT 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 610
AsuHPI GGTGA 2 cut(s) 77, 172
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 322
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BanI GGYRCC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 322, 366
BccI CCATC 2 cut(s) 512, 544
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 129
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmcAI AGTACT 2 cut(s) 299, 565
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 100, 241
BmrFI CCNGG 1 cut(s) 610
BmrI ACTGGG 2 cut(s) 17, 318
BmsI GCATC 2 cut(s) 346, 447
BmuI ACTGGG 2 cut(s) 17, 318
BpuMI CCSGG 1 cut(s) 610
BsaJI CCNNGG 3 cut(s) 102, 141, 537
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 3 cut(s) 23, 183, 324
BseDI CCNNGG 3 cut(s) 102, 141, 537
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 23, 183, 324
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 322, 366
BsiSI CCGG 3 cut(s) 96, 219, 609
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 610
Bsp1286I GDGCHC 2 cut(s) 322, 366
Bsp143I GATC 4 cut(s) 192, 424, 553, 568
BspACI CCGC 3 cut(s) 102, 104, 272
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 100, 241
BspPI GGATC 2 cut(s) 561, 563
BspT107I GGYRCC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 3 cut(s) 23, 183, 324
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 102, 141, 537
BssMI GATC 4 cut(s) 192, 424, 553, 568
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 65, 344, 400
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 3 cut(s) 11, 317, 326
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 4 cut(s) 195, 427, 556, 571
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 4 cut(s) 192, 424, 553, 568
BstMWI GCNNNNNNNGC 3 cut(s) 11, 317, 326
BstSCI CCNGG 1 cut(s) 608
BstSLI GKGCMC 1 cut(s) 322
BstUI CGCG 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 30, 176, 331
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 106
Cfr42I CCGCGG 1 cut(s) 105
Csp6I GTAC 4 cut(s) 50, 298, 396, 564
CspAI ACCGGT 1 cut(s) 95
CviAII CATG 4 cut(s) 125, 386, 573, 584
CviJI RGCY 2 cut(s) 11, 73
CviKI_1 RGCY 2 cut(s) 11, 73
CviQI GTAC 4 cut(s) 50, 298, 396, 564
DdeI CTNAG 1 cut(s) 560
DpnI GATC 4 cut(s) 194, 426, 555, 570
DpnII GATC 4 cut(s) 192, 424, 553, 568
DraIII CACNNNGTG 2 cut(s) 289, 326
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 449, 574
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 4 cut(s) 128, 389, 576, 587
FatI CATG 4 cut(s) 124, 385, 572, 583
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
HapII CCGG 3 cut(s) 96, 219, 609
Hin1II CATG 4 cut(s) 128, 389, 576, 587
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 580
HpaII CCGG 3 cut(s) 96, 219, 609
HphI GGTGA 2 cut(s) 77, 172
Hpy166II GTNNAC 2 cut(s) 163, 320
Hpy188I TCNGA 3 cut(s) 264, 429, 593
Hpy188III TCNNGA 5 cut(s) 134, 386, 414, 478, 513
Hpy8I GTNNAC 2 cut(s) 163, 320
HpyAV CCTTC 5 cut(s) 211, 230, 475, 479, 598
HpyCH4III ACNGT 3 cut(s) 65, 344, 400
HpyCH4IV ACGT 2 cut(s) 316, 418
HpyCH4V TGCA 5 cut(s) 176, 283, 320, 329, 576
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 317, 326
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 2 cut(s) 316, 418
Hsp92II CATG 4 cut(s) 128, 389, 576, 587
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 4 cut(s) 192, 424, 553, 568
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 9 cut(s) 36, 109, 164, 232, 291, 337, 380, 399, 498
LweI GCATC 2 cut(s) 346, 447
MaeII ACGT 2 cut(s) 316, 418
MaeIII GTNAC 3 cut(s) 84, 254, 532
MalI GATC 4 cut(s) 194, 426, 555, 570
MboI GATC 4 cut(s) 192, 424, 553, 568
MboII GAAGA 3 cut(s) 200, 442, 455
MfeI CAATTG 1 cut(s) 330
MhlI GDGCHC 2 cut(s) 322, 366
MluCI AATT 2 cut(s) 330, 523
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 262, 344, 532
MseI TTAA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 3 cut(s) 96, 219, 609
MspR9I CCNGG 1 cut(s) 610
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 610
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 11, 317, 326
NciI CCSGG 1 cut(s) 610
NdeII GATC 4 cut(s) 192, 424, 553, 568
NlaIII CATG 4 cut(s) 128, 389, 576, 587
NlaIV GGNNCC 2 cut(s) 100, 241
NmuCI GTSAC 1 cut(s) 532
PagI TCATGA 1 cut(s) 385
PctI GAATGC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 100, 241
PspPI GGNCC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 4 cut(s) 51, 299, 397, 565
RsaNI GTAC 4 cut(s) 50, 298, 396, 564
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 4 cut(s) 192, 424, 553, 568
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 2 cut(s) 299, 565
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 2 cut(s) 322, 366
SetI ASST 8 cut(s) 13, 75, 111, 168, 245, 319, 383, 421
SfaNI GCATC 2 cut(s) 346, 447
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SinI GGWCC 1 cut(s) 106
Sse9I AATT 2 cut(s) 330, 523
SsiI CCGC 3 cut(s) 102, 104, 272
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 65, 344, 400
TaiI ACGT 2 cut(s) 319, 421
TaqI TCGA 2 cut(s) 133, 441
TaqII GACCGA 1 cut(s) 551
TasI AATT 2 cut(s) 330, 523
TatI WGTACW 2 cut(s) 297, 563
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 3 cut(s) 30, 183, 331
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 201, 481
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 3 cut(s) 30, 183, 331
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 106
ZrmI AGTACT 2 cut(s) 299, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.