Rroxscaffold_4G00313540

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000515
Physical Location & Seq
Reverse (-)
37018439 .. 37020802
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313540.1

Sequence Viewer

Length: 438 bp
ATGGTTGGACTGGAGCTCTCTCTCCGATCAAATTTTTTGCAGGTAGATAGTGCAATAAGTGTGGAAGTTTGCTACAAGTGGTTCAGGTTCGGAAATTTGAGTATCATTATAAGAAGGGCTTCCATTTCTGCAGATGGGGATTGGTTCATGGATGGAAGTGTTATTTTTCGGGTGACTGAGGATAGCTTCATGGATCACCTAAGCACCGATATGCATGAATCGTGCCTCAATATTGACAAAGATTGCTTCCATGGATCAGCTTATGAGTCCACTCCAGTTGAAGATGCATTTGAGTTTGCCAAGATCATACCTAACCACAAAGTACATATTATCCAAGGAGCTGATCATTGTTACACATCGAATCAACCTGAGTTGGACACAGTTGTTGTGGACTTCCTAAGGGCTGCTCTGCAGCAAGACAAGGCTTCTTTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

145

Amino Acids

16.43

Weight (kDa)

4.72

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 31
AclWI GGATC 2 cut(s) 201, 262
AcsI RAATTY 2 cut(s) 31, 94
AfaI GTAC 1 cut(s) 324
AgsI TTSAA 2 cut(s) 281, 433
AluBI AGCT 4 cut(s) 16, 186, 260, 341
AluI AGCT 4 cut(s) 16, 186, 260, 341
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 2 cut(s) 201, 262
ApeKI GCWGC 2 cut(s) 404, 412
ApoI RAATTY 2 cut(s) 31, 94
Asp700I GAANNNNTTC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 184, 188
AxyI CCTNAGG 1 cut(s) 398
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 391, 424
BccI CCATC 2 cut(s) 128, 146
BclI TGATCA 1 cut(s) 343
BfaI CTAG 1 cut(s) 436
BfmI CTRYAG 2 cut(s) 129, 410
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 2 cut(s) 405, 413
BlsI GCNGC 2 cut(s) 406, 414
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 2 cut(s) 32, 258
Bpu10I CCTNAGC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 250, 334
Bse1I ACTGG 2 cut(s) 15, 275
Bse21I CCTNAGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 250, 334
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 168, 360
BseNI ACTGG 2 cut(s) 15, 275
BseXI GCAGC 2 cut(s) 391, 424
BsiHKAI GWGCWC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 5 cut(s) 26, 193, 254, 303, 343
Bsp19I CCATGG 1 cut(s) 250
BspCNI CTCAG 2 cut(s) 169, 361
BspMAI CTGCAG 2 cut(s) 133, 414
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 2 cut(s) 201, 262
BsrI ACTGG 2 cut(s) 15, 275
BssECI CCNNGG 2 cut(s) 250, 334
BssMI GATC 5 cut(s) 26, 193, 254, 303, 343
BssT1I CCWWGG 2 cut(s) 250, 334
Bst4CI ACNGT 1 cut(s) 382
BstDEI CTNAG 4 cut(s) 177, 200, 369, 398
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 5 cut(s) 29, 196, 257, 306, 346
BstMBI GATC 5 cut(s) 26, 193, 254, 303, 343
BstSFI CTRYAG 2 cut(s) 129, 410
BstV1I GCAGC 2 cut(s) 391, 424
Bsu36I CCTNAGG 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 323
CspCI CAANNNNNGTGG 4 cut(s) 42, 77, 259, 294
CviAII CATG 4 cut(s) 148, 190, 215, 251
CviJI RGCY 7 cut(s) 16, 119, 186, 260, 341, 404, 425
CviKI_1 RGCY 7 cut(s) 16, 119, 186, 260, 341, 404, 425
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 4 cut(s) 177, 200, 369, 398
DpnI GATC 5 cut(s) 28, 195, 256, 305, 345
DpnII GATC 5 cut(s) 26, 193, 254, 303, 343
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 250, 334
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 250, 334
EcoT22I ATGCAT 2 cut(s) 216, 289
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 250, 334
FaeI CATG 4 cut(s) 151, 193, 218, 254
FaiI YATR 9 cut(s) 110, 149, 191, 212, 216, 252, 264, 308, 327
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 4 cut(s) 147, 189, 214, 250
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 405, 413
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 405, 413
FspBI CTAG 1 cut(s) 436
GluI GCNGC 2 cut(s) 405, 413
GsuI CTGGAG 2 cut(s) 32, 258
Hin1II CATG 4 cut(s) 151, 193, 218, 254
HinfI GANTC 3 cut(s) 218, 266, 361
HphI GGTGA 2 cut(s) 184, 188
Hpy166II GTNNAC 2 cut(s) 270, 391
Hpy188I TCNGA 2 cut(s) 26, 92
Hpy8I GTNNAC 2 cut(s) 270, 391
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 6 cut(s) 40, 53, 131, 214, 287, 412
HpyF3I CTNAG 4 cut(s) 177, 200, 369, 398
Hsp92II CATG 4 cut(s) 151, 193, 218, 254
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 5 cut(s) 26, 193, 254, 303, 343
LmnI GCTCC 2 cut(s) 13, 338
LpnPI CCDG 4 cut(s) 26, 70, 288, 381
Lsp1109I GCAGC 2 cut(s) 391, 424
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 436
MaeIII GTNAC 2 cut(s) 172, 350
MalI GATC 5 cut(s) 28, 195, 256, 305, 345
MboI GATC 5 cut(s) 26, 193, 254, 303, 343
MboII GAAGA 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 31, 94
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 2 cut(s) 172, 236
Mph1103I ATGCAT 2 cut(s) 216, 289
MroXI GAANNNNTTC 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 250
NdeII GATC 5 cut(s) 26, 193, 254, 303, 343
NlaIII CATG 4 cut(s) 151, 193, 218, 254
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 2 cut(s) 216, 289
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 218, 361
PkrI GCNGC 2 cut(s) 406, 414
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 18
PstI CTGCAG 2 cut(s) 133, 414
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 18
SatI GCNGC 2 cut(s) 405, 413
Sau3AI GATC 5 cut(s) 26, 193, 254, 303, 343
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 18, 45, 89, 188, 201, 262, 313, 343, 370
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 2 cut(s) 129, 410
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 2 cut(s) 31, 94
SspI AATATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 436
SstI GAGCTC 1 cut(s) 18
StyI CCWWGG 2 cut(s) 250, 334
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 359
TasI AATT 2 cut(s) 31, 94
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 2 cut(s) 218, 361
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 404, 412
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 136, 178, 231
XapI RAATTY 2 cut(s) 31, 94
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 1 cut(s) 436
Zsp2I ATGCAT 2 cut(s) 216, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.