Rorug02G0037600

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000515
Physical Location & Seq
Forward (+)
2936514 .. 2937371
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0037600.1

Sequence Viewer

Length: 318 bp
ATGATTCCGAAGCCACTGCAGACGGTGGGGAAAGGCGCCGCCGTAATCGTTGCCGGATTTCTGACTCTCAATCTCGCTTCCACCGCCACGATTGGAGCCATACGATTCGCCGTCGAATCCAGAAGGAAAAAGACTGCTTTGCCTTGTGGGGTTTGTAAAGGAAAAGGGTTTTACATATGCAAGTTATGCAAAGGGAACGCCACCATTCAATGGTCGCCTCTGTATGACCCAGTAGCCATAAACCCTTGTCTCTGCCCAACCTGTGATGGGAATAGGGTACAGCGCTGCCTCAACTGTTTAGGGAAGGGATACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

105

Amino Acids

11.14

Weight (kDa)

9.53

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 2 cut(s) 39, 84
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 210, 267
AgsI TTSAA 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 254
Aor51HI AGCGCT 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 285
AspLEI GCGC 2 cut(s) 38, 285
BanI GGYRCC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 26, 95
BcgI CGANNNNNNTGC 1 cut(s) 32
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 2 cut(s) 39, 286
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 2 cut(s) 39, 286
BlsI GCNGC 2 cut(s) 40, 287
BmiI GGNNCC 2 cut(s) 37, 97
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 267
Bse1I ACTGG 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 210, 267
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 210, 267
BsmAI GTCTC 1 cut(s) 254
BspACI CCGC 2 cut(s) 39, 84
BspLI GGNNCC 2 cut(s) 37, 97
BspMAI CTGCAG 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 3 cut(s) 25, 296, 314
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 186
BstH2I RGCGCY 2 cut(s) 39, 286
BstHHI GCGC 2 cut(s) 38, 285
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 83, 186
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
CfoI GCGC 2 cut(s) 38, 285
Csp6I GTAC 1 cut(s) 278
CviJI RGCY 3 cut(s) 13, 98, 236
CviKI_1 RGCY 3 cut(s) 13, 98, 236
CviQI GTAC 1 cut(s) 278
DinI GGCGCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 6 cut(s) 101, 176, 178, 187, 225, 239
FauNDI CATATG 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 39, 286
Fsp4HI GCNGC 2 cut(s) 39, 286
GlaI GCGC 2 cut(s) 37, 284
GluI GCNGC 2 cut(s) 39, 286
HaeII RGCGCY 2 cut(s) 39, 286
HapII CCGG 1 cut(s) 54
HhaI GCGC 2 cut(s) 38, 285
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 2 cut(s) 36, 283
HinP1I GCGC 2 cut(s) 36, 283
HinfI GANTC 4 cut(s) 4, 64, 105, 116
HpaII CCGG 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 9, 63
Hpy188III TCNNGA 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 117, 298
HpyCH4III ACNGT 3 cut(s) 25, 296, 314
HpyCH4V TGCA 3 cut(s) 19, 180, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 186
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 2 cut(s) 36, 283
KasI GGCGCC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 67, 133, 243, 274
Lsp1109I GCAGC 1 cut(s) 272
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 2 cut(s) 228, 299
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 83, 186
NarI GGCGCC 1 cut(s) 36
NdeI CATATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 37, 97
PfeI GAWTC 3 cut(s) 4, 105, 116
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 40, 287
PleI GAGTC 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 37, 97
PstI CTGCAG 1 cut(s) 21
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SatI GCNGC 2 cut(s) 39, 286
SchI GAGTC 1 cut(s) 58
SetI ASST 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 17
SfoI GGCGCC 1 cut(s) 37
SgeI CNNG 9 cut(s) 66, 86, 100, 132, 156, 193, 242, 258, 273
SsiI CCGC 2 cut(s) 39, 84
SspDI GGCGCC 1 cut(s) 35
TaaI ACNGT 3 cut(s) 25, 296, 314
TaqI TCGA 1 cut(s) 114
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 4, 105, 116
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 285
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.