Rmu_sc0039672.1_g000001

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039672.1
OG0000515
Physical Location & Seq
Forward (+)
227 .. 2120
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039672.1_g000001.1.cds

Sequence Viewer

Length: 705 bp
atgctgggtaggcttcatgatggtatagccttctctttcggtttccaggagacaactagtattgcaaacattgctgttgcgttggagaatgaaggaattagctccttccgttttgactttgctggaaatggggaaagtgaaggtacctttcagtatggtcattatcgtaaagaggctgatgacttgcatgctgtagtccaacacttctctggggcaaatcgtgtaccaagtgcaatccttgggcacagtaaaggaggtaatgttgtgctcctatatgcttccaagtatcatgacattcctaccgttgtcaatgtttctgggcgttatgatatgaaaagaggcattaaagaacgcttgggagaagactttatgcaaagaatcaagaaggaaggatttattgatgttcagaataagagaggaagttatcgagtgacagaggaaagtttgatggatcgcctaagtacagatatgcatgaagcatgccttcagattgacaaagattgtcgcgtattaactgtccatgggtctgctgatgaaatcatcgctgttgaagacgcattagagtttgccaagattatacctaaccacaaactacatatcatagagggagctaaccataactacagctcacatcaagccgagttggcgtcagttgttgtggacttcgtaaagacatctctgcagcaggacaaggctacttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

234

Amino Acids

26.0

Weight (kDa)

5.82

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 1 cut(s) 507
AclWI GGATC 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 647
AfaI GTAC 3 cut(s) 145, 225, 463
AgsI TTSAA 1 cut(s) 551
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 102, 611, 627
AluI AGCT 3 cut(s) 102, 611, 627
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 682
Asp718I GGTACC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 369, 558
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 694
BccI CCATC 2 cut(s) 14, 442
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 44
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 3 cut(s) 192, 622, 680
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 1 cut(s) 683
BlsI GCNGC 1 cut(s) 684
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 369, 558
BsaHI GRCGYC 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 238, 520
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 238, 520
BseMI GCAATG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 1 cut(s) 694
BseYI CCCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 246, 270
Bsp143I GATC 1 cut(s) 451
Bsp19I CCATGG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 507
BspHI TCATGA 2 cut(s) 16, 289
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 684
BspPI GGATC 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 238, 520
BssMI GATC 1 cut(s) 451
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 2 cut(s) 238, 520
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 248, 304, 517
BstACI GRCGYC 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 189, 481
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 507
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 3 cut(s) 10, 71, 644
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 191, 483
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 3 cut(s) 192, 622, 680
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 2 cut(s) 369, 558
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 189, 481
CciI TCATGA 2 cut(s) 16, 289
CseI GACGC 2 cut(s) 563, 636
Csp6I GTAC 3 cut(s) 144, 224, 462
CviAII CATG 6 cut(s) 17, 188, 290, 473, 480, 521
CviJI RGCY 8 cut(s) 13, 29, 102, 176, 611, 627, 638, 695
CviKI_1 RGCY 8 cut(s) 13, 29, 102, 176, 611, 627, 638, 695
CviQI GTAC 3 cut(s) 144, 224, 462
DdeI CTNAG 1 cut(s) 458
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 238, 520
Eco57I CTGAAG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 238, 520
EcoT22I ATGCAT 1 cut(s) 474
ErhI CCWWGG 2 cut(s) 238, 520
FaeI CATG 6 cut(s) 20, 191, 293, 476, 483, 524
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 6 cut(s) 16, 187, 289, 472, 479, 520
Fnu4HI GCNGC 1 cut(s) 683
Fsp4HI GCNGC 1 cut(s) 683
FspBI CTAG 1 cut(s) 57
GluI GCNGC 1 cut(s) 683
GsaI CCCAGC 1 cut(s) 8
HgaI GACGC 2 cut(s) 563, 636
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 6 cut(s) 20, 191, 293, 476, 483, 524
HinfI GANTC 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 224, 661
Hpy188I TCNGA 2 cut(s) 408, 489
Hpy188III TCNNGA 3 cut(s) 17, 290, 382
Hpy8I GTNNAC 2 cut(s) 224, 661
HpyAV CCTTC 7 cut(s) 40, 86, 115, 134, 379, 383, 494
HpyCH4III ACNGT 3 cut(s) 248, 304, 517
HpyCH4V TGCA 6 cut(s) 65, 187, 233, 373, 472, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 71, 644
HpyF3I CTNAG 1 cut(s) 458
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 6 cut(s) 20, 191, 293, 476, 483, 524
KpnI GGTACC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 3 cut(s) 107, 273, 608
LpnPI CCDG 6 cut(s) 32, 59, 108, 195, 303, 671
Lsp1109I GCAGC 1 cut(s) 694
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 2 cut(s) 374, 563
MhlI GDGCHC 2 cut(s) 246, 270
MluCI AATT 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 63, 223
MnlI CCTC 6 cut(s) 166, 248, 332, 410, 430, 598
Mph1103I ATGCAT 1 cut(s) 474
MseI TTAA 3 cut(s) 345, 512, 703
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 10, 71, 644
NcoI CCATGG 1 cut(s) 520
NdeII GATC 1 cut(s) 451
NlaIII CATG 6 cut(s) 20, 191, 293, 476, 483, 524
NlaIV GGNNCC 1 cut(s) 145
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 2 cut(s) 191, 483
PaeI GCATGC 2 cut(s) 191, 483
PagI TCATGA 2 cut(s) 16, 289
PfeI GAWTC 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 684
RsaI GTAC 3 cut(s) 145, 225, 463
RsaNI GTAC 3 cut(s) 144, 224, 462
SaqAI TTAA 3 cut(s) 345, 512, 703
SatI GCNGC 1 cut(s) 683
Sau3AI GATC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 2 cut(s) 246, 270
SetI ASST 7 cut(s) 104, 145, 149, 259, 583, 613, 629
SfcI CTRYAG 3 cut(s) 192, 622, 680
SpeI ACTAGT 1 cut(s) 56
SphI GCATGC 2 cut(s) 191, 483
Sse9I AATT 1 cut(s) 96
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 238, 520
TaaI ACNGT 3 cut(s) 248, 304, 517
TaqI TCGA 1 cut(s) 427
TasI AATT 1 cut(s) 96
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 3 cut(s) 345, 512, 703
Tru9I TTAA 3 cut(s) 345, 512, 703
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 682
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 5 cut(s) 5, 105, 347, 489, 549
TspGWI ACGGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 191, 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.