AT3G47590

Esterase lipase thioesterase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000515
Physical Location & Seq
Reverse (-)
17535759 .. 17537580
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47590.2

Sequence Viewer

Length: 930 bp
ATGAGAACTCTTTTGCACAACTTCAATTTTGTCCCTCAAGATTCTCCTTATTACAAAACGTCCCCTTTTCCCACATCATCCTTCTTCAACGTTCGCTTTCCCATCAAGAACAACCAAATCTCTTGTAACAAAGCAAAGAATTTGAGAATGGATCCGTCTAAGGGAATCCAAGAACAGAGGATTGTGATTCCAAACAGACACAACGAGAAGCTGGTTGGTCTGCTTCATGAAACTGGTTCTACAGACATCGTAGTCTTGTGCCATGGCTTTCGATCAAACAAGAGTAACCAAATAATGAATAATGTGGCTGCTGCTATACAGAAAGAAGGGATCAGCGCTTTTCGTTTTGATTTCTCCGGGAATGGAGAGAGTGAAGGCAGTTTCTATTATGGTAACTATAACCATGAAGCTGATGATTTACATTCTGTTGTCCAATACTTCTCTAACAAGAACCGTGTGGTTCCTATAATCCTCGGTCACAGTAAGGGAGGTGATGTTGTCCTCCTCTACGCCTCCAAGTATCATGATGTCCGCAATGTAATCAATCTCTCGGGACGTTATGATCTTAAAAAGGGTATAAGAGAGCGTCTTGGAGAAGATTTTTTGGAAAGAATTAAGCAACAAGGATTCATCGATGTTGGAGATGGAAAATCGGGGTATCGTGTTACTGAGAAGAGCTTAATGGACAGGTTAAGCACTGATATTCATGAAGCTTGCCTCAAGATTGACAAAGAGTGCAGGGTCTTGACGGTTCATGGATCGGAGGACGAGGTAATACCTGTGGAAGATGCGAAGGAGTTTGCGAAGATCATACCAAACCACAAGCTGGAGATTGTGGAAGGAGCTAATCATGGTTATACTGAGCACCAAAGTCAATTAGTTTCAACAGTTATGGAGTTCATAAAGACAGTCATTGTGAAGAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

309

Amino Acids

35.05

Weight (kDa)

7.74

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 82 - 191 8e-15 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 83 - 185 4.1e-09 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 826
AciI CCGC 1 cut(s) 532
AclI AACGTT 1 cut(s) 90
AclWI GGATC 4 cut(s) 146, 159, 338, 766
AcsI RAATTY 1 cut(s) 139
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 2 cut(s) 161, 826
AgsI TTSAA 3 cut(s) 25, 88, 885
AluBI AGCT 6 cut(s) 211, 410, 678, 713, 826, 845
AluI AGCT 6 cut(s) 211, 410, 678, 713, 826, 845
Alw21I GWGCWC 1 cut(s) 867
AlwI GGATC 4 cut(s) 146, 159, 338, 766
Ama87I CYCGRG 1 cut(s) 550
Aor51HI AGCGCT 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 308, 311
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 550
BamHI GGATCC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 2 cut(s) 295, 298
BccI CCATC 2 cut(s) 110, 638
BcnI CCSGG 1 cut(s) 358
BfaI CTAG 1 cut(s) 928
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 339
BisI GCNGC 2 cut(s) 309, 312
BlsI GCNGC 2 cut(s) 310, 313
Bme1390I CCNGG 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 550
BmiI GGNNCC 2 cut(s) 153, 462
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 778
BpmI CTGGAG 1 cut(s) 848
BpuEI CTTGAG 2 cut(s) 21, 704
BpuMI CCSGG 1 cut(s) 358
Bsa29I ATCGAT 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 262, 472
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 826
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 541
BseCI ATCGAT 1 cut(s) 633
BseDI CCNNGG 2 cut(s) 262, 472
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 161, 826
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 2 cut(s) 660, 852
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 295, 298
BsgI GTGCAG 1 cut(s) 757
BshVI ATCGAT 1 cut(s) 633
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 3 cut(s) 17, 46, 567
BslI CCNNNNNNNGG 2 cut(s) 161, 826
BsmFI GGGAC 3 cut(s) 17, 46, 567
BsoBI CYCGRG 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 6 cut(s) 151, 272, 330, 562, 758, 807
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 1 cut(s) 532
BspCNI CTCAG 2 cut(s) 661, 853
BspDI ATCGAT 1 cut(s) 633
BspHI TCATGA 3 cut(s) 226, 523, 706
BspLI GGNNCC 2 cut(s) 153, 462
BspPI GGATC 4 cut(s) 146, 159, 338, 766
BspQI GCTCTTC 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 262, 472
BssMI GATC 6 cut(s) 151, 272, 330, 562, 758, 807
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 5 cut(s) 455, 482, 751, 889, 910
Bst6I CTCTTC 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 3 cut(s) 159, 669, 861
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 6 cut(s) 154, 275, 333, 565, 761, 810
BstMBI GATC 6 cut(s) 151, 272, 330, 562, 758, 807
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 295, 298
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
Bsu15I ATCGAT 1 cut(s) 633
BsuTUI ATCGAT 1 cut(s) 633
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 715
CciI TCATGA 3 cut(s) 226, 523, 706
CfoI GCGC 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 633
CseI GACGC 1 cut(s) 575
CviAII CATG 7 cut(s) 227, 263, 404, 524, 707, 755, 851
CviJI RGCY 8 cut(s) 211, 267, 308, 410, 678, 713, 826, 845
CviKI_1 RGCY 8 cut(s) 211, 267, 308, 410, 678, 713, 826, 845
DdeI CTNAG 3 cut(s) 159, 669, 861
DpnI GATC 6 cut(s) 153, 274, 332, 564, 760, 809
DpnII GATC 6 cut(s) 151, 272, 330, 562, 758, 807
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 262
Eco47III AGCGCT 1 cut(s) 337
Eco88I CYCGRG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 7 cut(s) 230, 266, 407, 527, 710, 758, 854
FaqI GGGAC 3 cut(s) 17, 46, 567
FatI CATG 7 cut(s) 226, 262, 403, 523, 706, 754, 850
Fnu4HI GCNGC 2 cut(s) 309, 312
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 309, 312
FspBI CTAG 1 cut(s) 928
GlaI GCGC 1 cut(s) 337
GluI GCNGC 2 cut(s) 309, 312
GsuI CTGGAG 1 cut(s) 848
HaeII RGCGCY 1 cut(s) 339
HapII CCGG 1 cut(s) 357
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 338
Hin1II CATG 7 cut(s) 230, 266, 407, 527, 710, 758, 854
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 711
HinfI GANTC 4 cut(s) 41, 165, 187, 627
HpaII CCGG 1 cut(s) 357
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 763
Hpy188III TCNNGA 8 cut(s) 38, 106, 227, 524, 552, 707, 721, 745
HpyAV CCTTC 5 cut(s) 91, 320, 368, 787, 833
HpyCH4III ACNGT 5 cut(s) 455, 482, 751, 889, 910
HpyCH4IV ACGT 3 cut(s) 59, 90, 556
HpyCH4V TGCA 2 cut(s) 16, 738
HpyF3I CTNAG 3 cut(s) 159, 669, 861
HpySE526I ACGT 3 cut(s) 59, 90, 556
Hsp92II CATG 7 cut(s) 230, 266, 407, 527, 710, 758, 854
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 6 cut(s) 151, 272, 330, 562, 758, 807
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 1 cut(s) 842
LpnPI CCDG 7 cut(s) 197, 219, 370, 673, 724, 792, 812
Lsp1109I GCAGC 2 cut(s) 295, 298
LweI GCATC 1 cut(s) 778
MaeI CTAG 1 cut(s) 928
MaeII ACGT 3 cut(s) 59, 90, 556
MaeIII GTNAC 5 cut(s) 125, 284, 392, 476, 664
MalI GATC 6 cut(s) 153, 274, 332, 564, 760, 809
MboI GATC 6 cut(s) 151, 272, 330, 562, 758, 807
MboII GAAGA 5 cut(s) 76, 608, 685, 797, 817
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 4 cut(s) 25, 139, 612, 875
MmeI TCCRAC 1 cut(s) 619
MseI TTAA 4 cut(s) 567, 615, 680, 692
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 358
NciI CCSGG 1 cut(s) 358
NcoI CCATGG 1 cut(s) 262
NdeII GATC 6 cut(s) 151, 272, 330, 562, 758, 807
NlaIII CATG 7 cut(s) 230, 266, 407, 527, 710, 758, 854
NlaIV GGNNCC 2 cut(s) 153, 462
NmuCI GTSAC 1 cut(s) 476
PagI TCATGA 3 cut(s) 226, 523, 706
PciSI GCTCTTC 1 cut(s) 668
PfeI GAWTC 4 cut(s) 41, 165, 187, 627
PflMI CCANNNNNTGG 1 cut(s) 826
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 2 cut(s) 310, 313
Psp1406I AACGTT 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 153, 462
PsuI RGATCY 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 668
SaqAI TTAA 4 cut(s) 567, 615, 680, 692
SatI GCNGC 2 cut(s) 309, 312
Sau3AI GATC 6 cut(s) 151, 272, 330, 562, 758, 807
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 1 cut(s) 778
SfcI CTRYAG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 36, 719
SmoI CTYRAG 2 cut(s) 36, 719
Sse9I AATT 4 cut(s) 25, 139, 612, 875
SsiI CCGC 1 cut(s) 532
SspMI CTAG 1 cut(s) 928
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 5 cut(s) 455, 482, 751, 889, 910
TaiI ACGT 3 cut(s) 62, 93, 559
TaqI TCGA 2 cut(s) 271, 633
TaqII GACCGA 1 cut(s) 464
TasI AATT 4 cut(s) 25, 139, 612, 875
TfiI GAWTC 4 cut(s) 41, 165, 187, 627
Tru1I TTAA 4 cut(s) 567, 615, 680, 692
Tru9I TTAA 4 cut(s) 567, 615, 680, 692
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 2 cut(s) 308, 311
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 9 cut(s) 215, 243, 311, 420, 619, 695, 723, 743, 889
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 1 cut(s) 703
Van91I CCANNNNNTGG 1 cut(s) 826
XapI RAATTY 1 cut(s) 139
XspI CTAG 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.