Rmu_sc0039672.1_g000003

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039672.1
OG0000515
Physical Location & Seq
Forward (+)
13105 .. 16401
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039672.1_g000003.1.cds

Sequence Viewer

Length: 855 bp
atgcagcgctgtgaagatcgagaagcaaagactgtgcaaaacgaatcttggaataacatggcagaggctgcacagatgctagtgagccagaagcagaaaatgattgtaaccaacaatcatggtgaaaagcttgtcggcttattacatgaaaccggttcaagggagattgtgatcttgtgccatggagcccgagcctccaaggaccactttatcatagagaaccttgctgttgcattggaaaaggaaggaattagttccttccgttttgatttcgctggaaatggagaaagtgaaggcgcctttcagattggtcacttgaggagagaagctgatgacttgcatgctgtaatccaacacttctctggatcaaaccatgtagttagtgcaattttcgggcacagtaaaggaggcggtgatgtgctcctgtatgcttcaaagtatcatgacattcctacggttgtcgaagcttctgcacgctatgacctaaagaaagtcattgaaaaacatcatgggaaagactttatggagaagatcaaaaaggaaggattcgttgatattggaagtcctaaatttcgggtgactgaggaaagcttgatggaccgcctaagcaccgatatgtgtgaatcgtgcctcaagattgacaaagattgccgggtgctaatagtccatggatctgctgatgagatcactcctgttgaagatgcatttgagtttgccaagatcatacctaaccacaaaatacatattatagaaggagctgatcattgttacacatcgcatcaggccgagttagacacagttgttgtggacttcataaaagcagctctgcagcaggacaaggcttcttccaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

284

Amino Acids

31.65

Weight (kDa)

5.77

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 2 cut(s) 411, 601
AclWI GGATC 2 cut(s) 373, 679
AcsI RAATTY 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 297
AfeI AGCGCT 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 159
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 4 cut(s) 159, 435, 500, 698
AluBI AGCT 6 cut(s) 130, 329, 467, 591, 758, 824
AluI AGCT 6 cut(s) 130, 329, 467, 591, 758, 824
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 2 cut(s) 373, 679
AlwNI CAGNNNCTG 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 8
AoxI GGCC 1 cut(s) 783
ApeKI GCWGC 4 cut(s) 4, 68, 821, 829
ApoI RAATTY 1 cut(s) 569
AsiGI ACCGGT 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 253
AspLEI GCGC 2 cut(s) 9, 299
AspS9I GGNCC 2 cut(s) 202, 598
AsuC2I CCSGG 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 134, 425, 589
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 202, 598
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 16, 55, 833, 841
BccI CCATC 1 cut(s) 589
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 653
BfaI CTAG 2 cut(s) 80, 853
BfmI CTRYAG 1 cut(s) 827
BfoI RGCGCY 2 cut(s) 10, 300
BisI GCNGC 4 cut(s) 5, 69, 822, 830
BlsI GCNGC 4 cut(s) 6, 70, 823, 831
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 2 cut(s) 202, 598
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 202, 598
BmiI GGNNCC 2 cut(s) 187, 298
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 3 cut(s) 66, 691, 787
Bpu10I CCTNAGC 1 cut(s) 605
BpuEI CTTGAG 2 cut(s) 337, 617
BpuMI CCSGG 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 181, 198, 667
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 181, 198, 667
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 4 cut(s) 16, 55, 833, 841
BsgI GTGCAG 2 cut(s) 54, 456
BshFI GGCC 1 cut(s) 785
BshNI GGYRCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 2 cut(s) 153, 652
BslI CCNNNNNNNGG 1 cut(s) 159
BsnI GGCC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 190, 399, 423
Bsp143I GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
Bsp19I CCATGG 2 cut(s) 181, 667
BspACI CCGC 2 cut(s) 411, 601
BspANI GGCC 1 cut(s) 785
BspCNI CTCAG 1 cut(s) 574
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 187, 298
BspMAI CTGCAG 1 cut(s) 831
BspPI GGATC 2 cut(s) 373, 679
BspT107I GGYRCC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 181, 198, 667
BssMI GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 181, 198, 667
Bst4CI ACNGT 4 cut(s) 34, 401, 457, 799
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 342, 475
BstDEI CTNAG 2 cut(s) 582, 605
BstDSI CCRYGG 2 cut(s) 181, 667
BstH2I RGCGCY 2 cut(s) 10, 300
BstHHI GCGC 2 cut(s) 9, 299
BstKTI GATC 8 cut(s) 19, 174, 368, 534, 674, 687, 723, 763
BstMBI GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 827
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 4 cut(s) 16, 55, 833, 841
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BsuRI GGCC 1 cut(s) 785
BtgI CCRYGG 2 cut(s) 181, 667
BtgZI GCGATG 1 cut(s) 759
Cac8I GCNNGC 2 cut(s) 342, 475
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 9, 299
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 202, 598
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 9 cut(s) 58, 119, 146, 182, 341, 374, 443, 509, 668
DdeI CTNAG 2 cut(s) 582, 605
DinI GGCGCC 1 cut(s) 298
DpnI GATC 8 cut(s) 18, 173, 367, 533, 673, 686, 722, 762
DpnII GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
Eco130I CCWWGG 3 cut(s) 181, 198, 667
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 202, 598
Eco47III AGCGCT 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 189
EcoT14I CCWWGG 3 cut(s) 181, 198, 667
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 190
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
ErhI CCWWGG 3 cut(s) 181, 198, 667
FaeI CATG 9 cut(s) 61, 122, 149, 185, 344, 377, 446, 512, 671
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 9 cut(s) 57, 118, 145, 181, 340, 373, 442, 508, 667
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 5, 69, 822, 830
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 4 cut(s) 5, 69, 822, 830
FspBI CTAG 2 cut(s) 80, 853
GlaI GCGC 2 cut(s) 8, 298
GluI GCNGC 4 cut(s) 5, 69, 822, 830
HaeII RGCGCY 2 cut(s) 10, 300
HaeIII GGCC 1 cut(s) 785
HapII CCGG 2 cut(s) 153, 652
HhaI GCGC 2 cut(s) 9, 299
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 9 cut(s) 61, 122, 149, 185, 344, 377, 446, 512, 671
Hin6I GCGC 2 cut(s) 7, 297
HinP1I GCGC 2 cut(s) 7, 297
HindIII AAGCTT 3 cut(s) 128, 465, 589
HinfI GANTC 3 cut(s) 44, 546, 623
HpaII CCGG 2 cut(s) 153, 652
HphI GGTGA 3 cut(s) 134, 425, 589
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 20, 363, 443, 634
Hpy8I GTNNAC 1 cut(s) 808
HpyAV CCTTC 5 cut(s) 239, 268, 287, 536, 746
HpyCH4III ACNGT 4 cut(s) 34, 401, 457, 799
HpyCH4V TGCA 9 cut(s) 4, 37, 71, 233, 340, 386, 473, 704, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 582, 605
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 9 cut(s) 61, 122, 149, 185, 344, 377, 446, 512, 671
HspAI GCGC 2 cut(s) 7, 297
KasI GGCGCC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
LmnI GCTCC 3 cut(s) 185, 426, 755
LpnPI CCDG 9 cut(s) 101, 166, 261, 348, 437, 665, 705, 767, 818
Lsp1109I GCAGC 4 cut(s) 16, 55, 833, 841
LweI GCATC 3 cut(s) 66, 691, 787
MaeI CTAG 2 cut(s) 80, 853
MaeIII GTNAC 4 cut(s) 106, 311, 577, 767
MalI GATC 8 cut(s) 18, 173, 367, 533, 673, 686, 722, 762
MboI GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
MboII GAAGA 4 cut(s) 26, 541, 710, 837
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 3 cut(s) 190, 399, 423
MluCI AATT 3 cut(s) 249, 387, 569
Mly113I GGCGCC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 6 cut(s) 58, 205, 312, 401, 577, 641
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 614
MspI CCGG 2 cut(s) 153, 652
MspR9I CCNGG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 68
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 1 cut(s) 653
NcoI CCATGG 2 cut(s) 181, 667
NdeII GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
NlaIII CATG 9 cut(s) 61, 122, 149, 185, 344, 377, 446, 512, 671
NlaIV GGNNCC 2 cut(s) 187, 298
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 2 cut(s) 311, 577
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 1 cut(s) 344
PaeI GCATGC 1 cut(s) 344
PagI TCATGA 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 44, 546, 623
PinAI ACCGGT 1 cut(s) 152
PkrI GCNGC 4 cut(s) 6, 70, 823, 831
PluTI GGCGCC 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 187, 298
PspPI GGNCC 2 cut(s) 202, 598
PstI CTGCAG 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 671
RseI CAYNNNNRTG 1 cut(s) 614
SatI GCNGC 4 cut(s) 5, 69, 822, 830
Sau3AI GATC 8 cut(s) 16, 171, 365, 531, 671, 684, 720, 760
Sau96I GGNCC 2 cut(s) 202, 598
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 3 cut(s) 190, 399, 423
SetI ASST 9 cut(s) 132, 225, 331, 469, 486, 593, 730, 760, 826
SfaNI GCATC 3 cut(s) 66, 691, 787
SfcI CTRYAG 1 cut(s) 827
SfoI GGCGCC 1 cut(s) 298
SinI GGWCC 2 cut(s) 202, 598
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 316, 632
SmoI CTYRAG 2 cut(s) 316, 632
SphI GCATGC 1 cut(s) 344
Sse9I AATT 3 cut(s) 249, 387, 569
SsiI CCGC 2 cut(s) 411, 601
SspDI GGCGCC 1 cut(s) 296
SspMI CTAG 2 cut(s) 80, 853
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 3 cut(s) 181, 198, 667
TaaI ACNGT 4 cut(s) 34, 401, 457, 799
TaqI TCGA 2 cut(s) 19, 462
TasI AATT 3 cut(s) 249, 387, 569
TfiI GAWTC 3 cut(s) 44, 546, 623
TseFI GTSAC 2 cut(s) 311, 577
TseI GCWGC 4 cut(s) 4, 68, 821, 829
Tsp45I GTSAC 2 cut(s) 311, 577
TspDTI ATGAA 2 cut(s) 162, 802
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 2 cut(s) 202, 598
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 80, 853
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.