MD15G1208700.v1.1

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000515
Physical Location & Seq
Reverse (-)
16649257 .. 16651619
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1208700.v1.1.491

Sequence Viewer

Length: 900 bp
ATGCTGCTCTCAAGTTCTTTCACTTCCATAAGCTTCCCTTCACCAAACTTTAATCTTCCCCGCAATCGCAGCCCAAAACGAATCTTGAAAATGGCAGAAGCTGCAAAAAACCCAGTGGGTCAGCAGCAGAAAATCATTGTGCCCAACAAACACGGTGAAAAACTTGTGGGATTGTTACACGAAACCAGTTCCCCGGACCTTGTAATCTTATGCCATGGTTTTCGATCCACCAAGGAAAGCTCTGTTATGGTGAACCTTGCTGTTGCACTGGAAAATGAAGGGATTGGTTCCTTCCGTTTTGACTTTGCCGGAAATGGGGAAAGTGAAGGCACCTTTCAGTATGGTAACTATCGGCGAGAGGCTGATGACTTGCACTCTGTGGTAGAATACTTGTCTAGAGAAAAACGTGCACCCAGTGCAATTCTTGGACACAGTAAAGGAGGTGATGATGTGCTCCTGTATGCTTCTACGTATCATGACATTTGTACAGTTGTCAATGTTTCTGGACGTTATGATCTGAAGAAAGGCATTGAAGAACGCTTGGGGAAAGACTATATGGAAGTAATCAAGAAGGAAGGATTCATTGATGTAAAGAATAAGTCAGGAGCTGTTAGTTATCGTGTGACCGAGGACAGTTTAATGGATCGTCTAAGCACTGATATGCACAAATCATGCCTTCAGATTGACAAAGAATGCCGGGTGTTGACAATCCATGGAACTGCCGACGAGATCATCCCCGTTGAAGATGCATTAGAGTTTGCCAAGATAATACCTAACCACAAATTACATCTTATAGAAGGCGCTAATCATTCGTACACCTCGCATCAAGCCGAGTTAGCATCGGTTGTCTTGGACTTCATTAAGGCAGCTCTGCAGCAGGATAAGGCTACTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

300

Amino Acids

33.16

Weight (kDa)

6.32

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 67 - 271 2.5e-14 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 219, 651
AcuI CTGAAG 2 cut(s) 539, 662
AdeI CACNNNGTG 2 cut(s) 379, 416
AfaI GTAC 2 cut(s) 487, 815
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 3 cut(s) 88, 533, 743
AluBI AGCT 5 cut(s) 33, 101, 240, 608, 869
AluI AGCT 5 cut(s) 33, 101, 240, 608, 869
Alw21I GWGCWC 2 cut(s) 412, 456
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 2 cut(s) 219, 651
AlwNI CAGNNNCTG 2 cut(s) 101, 608
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 6 cut(s) 4, 69, 101, 124, 866, 874
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 2 cut(s) 194, 698
AsuHPI GGTGA 4 cut(s) 33, 167, 262, 455
AvaII GGWCC 1 cut(s) 196
BaeGI GKGCMC 2 cut(s) 144, 412
BanI GGYRCC 1 cut(s) 329
Bbv12I GWGCWC 2 cut(s) 412, 456
BbvI GCAGC 5 cut(s) 81, 88, 136, 878, 886
BcnI CCSGG 2 cut(s) 194, 698
BfaI CTAG 2 cut(s) 396, 898
BfmI CTRYAG 1 cut(s) 872
BfoI RGCGCY 1 cut(s) 804
BisI GCNGC 6 cut(s) 5, 70, 102, 125, 867, 875
BlsI GCNGC 6 cut(s) 6, 71, 103, 126, 868, 876
Bme1390I CCNGG 2 cut(s) 194, 698
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 289, 331
BmrFI CCNGG 2 cut(s) 194, 698
BmrI ACTGGG 2 cut(s) 107, 408
BmsI GCATC 3 cut(s) 736, 832, 848
BmuI ACTGGG 2 cut(s) 107, 408
BpuMI CCSGG 2 cut(s) 194, 698
BsaAI YACGTR 1 cut(s) 471
BsaJI CCNNGG 5 cut(s) 192, 214, 231, 627, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 4 cut(s) 113, 186, 273, 414
BseDI CCNNGG 5 cut(s) 192, 214, 231, 627, 712
BseGI GGATG 1 cut(s) 732
BseLI CCNNNNNNNGG 1 cut(s) 315
BseNI ACTGG 4 cut(s) 113, 186, 273, 414
BseSI GKGCMC 2 cut(s) 144, 412
BseXI GCAGC 5 cut(s) 81, 88, 136, 878, 886
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 2 cut(s) 412, 456
BsiSI CCGG 3 cut(s) 194, 309, 697
BslI CCNNNNNNNGG 1 cut(s) 315
BsmI GAATGC 1 cut(s) 698
Bsp1286I GDGCHC 3 cut(s) 144, 412, 456
Bsp1407I TGTACA 1 cut(s) 485
Bsp143I GATC 4 cut(s) 224, 514, 643, 729
Bsp19I CCATGG 2 cut(s) 214, 712
BspACI CCGC 1 cut(s) 61
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 289, 331
BspMAI CTGCAG 1 cut(s) 876
BspPI GGATC 2 cut(s) 219, 651
BspT107I GGYRCC 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 485
BsrI ACTGG 4 cut(s) 113, 186, 273, 414
BssECI CCNNGG 5 cut(s) 192, 214, 231, 627, 712
BssMI GATC 4 cut(s) 224, 514, 643, 729
BssT1I CCWWGG 3 cut(s) 214, 231, 712
Bst4CI ACNGT 4 cut(s) 155, 434, 490, 635
BstAPI GCANNNNNTGC 2 cut(s) 101, 416
BstAUI TGTACA 1 cut(s) 485
BstBAI YACGTR 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 650
BstDSI CCRYGG 2 cut(s) 214, 712
BstF5I GGATG 1 cut(s) 732
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 4 cut(s) 227, 517, 646, 732
BstMBI GATC 4 cut(s) 224, 514, 643, 729
BstMWI GCNNNNNNNGC 4 cut(s) 69, 101, 416, 836
BstSCI CCNGG 2 cut(s) 192, 696
BstSFI CTRYAG 1 cut(s) 872
BstSLI GKGCMC 2 cut(s) 144, 412
BstSNI TACGTA 1 cut(s) 471
BstV1I GCAGC 5 cut(s) 81, 88, 136, 878, 886
BtgI CCRYGG 2 cut(s) 214, 712
BtsCI GGATG 1 cut(s) 732
BtsIMutI CAGTG 4 cut(s) 120, 266, 421, 654
CaiI CAGNNNCTG 2 cut(s) 101, 608
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 803
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 486, 814
CviAII CATG 4 cut(s) 215, 476, 672, 713
CviJI RGCY 9 cut(s) 33, 72, 101, 240, 362, 608, 830, 869, 887
CviKI_1 RGCY 9 cut(s) 33, 72, 101, 240, 362, 608, 830, 869, 887
CviQI GTAC 2 cut(s) 486, 814
DdeI CTNAG 1 cut(s) 650
DpnI GATC 4 cut(s) 226, 516, 645, 731
DpnII GATC 4 cut(s) 224, 514, 643, 729
DraIII CACNNNGTG 2 cut(s) 379, 416
Eco105I TACGTA 1 cut(s) 471
Eco130I CCWWGG 3 cut(s) 214, 231, 712
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 539, 662
EcoT14I CCWWGG 3 cut(s) 214, 231, 712
EcoT22I ATGCAT 1 cut(s) 751
ErhI CCWWGG 3 cut(s) 214, 231, 712
FaeI CATG 4 cut(s) 218, 479, 675, 716
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 4 cut(s) 214, 475, 671, 712
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 6 cut(s) 5, 70, 102, 125, 867, 875
FokI GGATG 1 cut(s) 719
Fsp4HI GCNGC 6 cut(s) 5, 70, 102, 125, 867, 875
FspBI CTAG 2 cut(s) 396, 898
GlaI GCGC 1 cut(s) 802
GluI GCNGC 6 cut(s) 5, 70, 102, 125, 867, 875
HaeII RGCGCY 1 cut(s) 804
HapII CCGG 3 cut(s) 194, 309, 697
HhaI GCGC 1 cut(s) 803
Hin1II CATG 4 cut(s) 218, 479, 675, 716
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 2 cut(s) 81, 579
HpaII CCGG 3 cut(s) 194, 309, 697
HphI GGTGA 4 cut(s) 33, 167, 262, 455
Hpy166II GTNNAC 4 cut(s) 253, 410, 705, 816
Hpy188I TCNGA 2 cut(s) 519, 681
Hpy188III TCNNGA 6 cut(s) 85, 396, 476, 504, 568, 603
Hpy8I GTNNAC 4 cut(s) 253, 410, 705, 816
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 8 cut(s) 48, 272, 301, 320, 565, 569, 686, 791
HpyCH4III ACNGT 4 cut(s) 155, 434, 490, 635
HpyCH4IV ACGT 3 cut(s) 406, 470, 508
HpyCH4V TGCA 8 cut(s) 104, 266, 373, 410, 419, 664, 749, 874
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 101, 416, 836
HpyF3I CTNAG 1 cut(s) 650
HpySE526I ACGT 3 cut(s) 406, 470, 508
Hsp92II CATG 4 cut(s) 218, 479, 675, 716
HspAI GCGC 1 cut(s) 801
Kzo9I GATC 4 cut(s) 224, 514, 643, 729
LmnI GCTCC 2 cut(s) 459, 605
Lsp1109I GCAGC 5 cut(s) 81, 88, 136, 878, 886
LweI GCATC 3 cut(s) 736, 832, 848
MaeI CTAG 2 cut(s) 396, 898
MaeII ACGT 3 cut(s) 406, 470, 508
MaeIII GTNAC 3 cut(s) 174, 344, 622
MalI GATC 4 cut(s) 226, 516, 645, 731
MboI GATC 4 cut(s) 224, 514, 643, 729
MboII GAAGA 4 cut(s) 47, 532, 545, 755
MhlI GDGCHC 3 cut(s) 144, 412, 456
MluCI AATT 2 cut(s) 420, 782
MnlI CCTC 4 cut(s) 352, 434, 622, 829
Mph1103I ATGCAT 1 cut(s) 751
MseI TTAA 3 cut(s) 51, 638, 861
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 3 cut(s) 194, 309, 697
MspR9I CCNGG 2 cut(s) 194, 698
Mva1269I GAATGC 1 cut(s) 698
MwoI GCNNNNNNNGC 4 cut(s) 69, 101, 416, 836
NciI CCSGG 2 cut(s) 194, 698
NcoI CCATGG 2 cut(s) 214, 712
NdeII GATC 4 cut(s) 224, 514, 643, 729
NlaIII CATG 4 cut(s) 218, 479, 675, 716
NlaIV GGNNCC 2 cut(s) 289, 331
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 622
NsiI ATGCAT 1 cut(s) 751
PagI TCATGA 1 cut(s) 475
PctI GAATGC 1 cut(s) 698
PfeI GAWTC 2 cut(s) 81, 579
PkrI GCNGC 6 cut(s) 6, 71, 103, 126, 868, 876
Ppu21I YACGTR 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 289, 331
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 876
PstNI CAGNNNCTG 2 cut(s) 101, 608
RsaI GTAC 2 cut(s) 487, 815
RsaNI GTAC 2 cut(s) 486, 814
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 3 cut(s) 51, 638, 861
SatI GCNGC 6 cut(s) 5, 70, 102, 125, 867, 875
Sau3AI GATC 4 cut(s) 224, 514, 643, 729
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 194, 698
SduI GDGCHC 3 cut(s) 144, 412, 456
SfaNI GCATC 3 cut(s) 736, 832, 848
SfcI CTRYAG 1 cut(s) 872
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SnaBI TACGTA 1 cut(s) 471
Sse9I AATT 2 cut(s) 420, 782
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 396, 898
StyD4I CCNGG 2 cut(s) 192, 696
StyI CCWWGG 3 cut(s) 214, 231, 712
TaaI ACNGT 4 cut(s) 155, 434, 490, 635
TaiI ACGT 3 cut(s) 409, 473, 511
TaqI TCGA 1 cut(s) 223
TaqII GACCGA 1 cut(s) 641
TasI AATT 2 cut(s) 420, 782
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 2 cut(s) 81, 579
Tru1I TTAA 3 cut(s) 51, 638, 861
Tru9I TTAA 3 cut(s) 51, 638, 861
TscAI CASTG 4 cut(s) 120, 273, 421, 661
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 6 cut(s) 4, 69, 101, 124, 866, 874
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 291, 571, 847
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 4 cut(s) 120, 273, 421, 661
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 395
XspI CTAG 2 cut(s) 396, 898
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.