Rmu_sc0004423.1_g000004

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004423.1
OG0000515
Physical Location & Seq
Forward (+)
8422 .. 11500
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004423.1_g000004.1.cds

Sequence Viewer

Length: 1002 bp
atgtatgatatgcttgtagggactgctacttatcgtgtgacagaggaaagtttaatggatagcgtaagtactgatatgcatgaatcatgccttaagattgacaaagaatgccgctgtgaagatcgagaagcaaagactgtgcaaaacgaatcttggaataacatggcagaggctgcacagatgctagtgagccagaagcagaaaatgattgtaaccaacaatcatggtgaaaagcttgtcggcttattacatgaaaccggttcaagggagattgtgatcttgtgccatggagcccgagcctccaaggaccactttatcatagagaaccttgctgttgcattggaaaaggaaggaattagttccttccgttttgatttcgctggaaatggagaaagtgaaggcacctttcagtttggtcacatgaggagagaagctgatgacttgcatgctgtgtttggtcacatgaggagagaggctgatgacttgcatgctgtaatccaacacttctctggatcaaaccatgtagttagtgcaattttcgggcacagtaaaggaggcggtgatgtgctcctgtatgcttcaaagtatcatgacattcctacggttgtcgaagcttctgcacgctatgacctaaagaaaggcattgaaggacgcctggggaaagactttatggagaagatcaaaaaggaaggattcgttgatattggaagtcctaaatttcgggtgactgaggaaagcttgatggaccgcctaagcaccgatatgtgcgaatcgtgcctcaagattgacaaagattgccgggtgctaatagtccatggatctgctgatgagatcactcctgttgaagatgcatttgagtttgccaagatcatacctaaccacaaaatacatattatagaaggagctgatcattgttacagatcgcatcaggccgagttagacacagttgttgtggacttcataaaagcagctctgcagcaggaaaaggcttcttccaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

333

Amino Acids

37.28

Weight (kDa)

5.49

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AciI CCGC 3 cut(s) 112, 558, 748
AclWI GGATC 2 cut(s) 520, 826
AcsI RAATTY 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 264
AflII CTTAAG 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 4 cut(s) 264, 582, 647, 845
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 6 cut(s) 235, 434, 614, 738, 905, 971
AluI AGCT 6 cut(s) 235, 434, 614, 738, 905, 971
Alw21I GWGCWC 1 cut(s) 570
AlwI GGATC 2 cut(s) 520, 826
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 1 cut(s) 930
ApeKI GCWGC 3 cut(s) 173, 968, 976
ApoI RAATTY 1 cut(s) 716
AsiGI ACCGGT 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 307, 745
AsuC2I CCSGG 1 cut(s) 800
AsuHPI GGTGA 3 cut(s) 239, 572, 736
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 2 cut(s) 307, 745
BaeGI GKGCMC 1 cut(s) 546
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 160, 980, 988
BccI CCATC 1 cut(s) 736
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 1 cut(s) 656
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 800
BfaI CTAG 2 cut(s) 185, 1000
BfmI CTRYAG 1 cut(s) 974
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 4 cut(s) 112, 174, 969, 977
BlsI GCNGC 4 cut(s) 113, 175, 970, 978
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 656, 800
Bme18I GGWCC 2 cut(s) 307, 745
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 307, 745
BmiI GGNNCC 2 cut(s) 292, 403
BmrFI CCNGG 2 cut(s) 656, 800
BmsI GCATC 3 cut(s) 171, 838, 934
Bpu10I CCTNAGC 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 286, 303, 655, 814
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 275
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 4 cut(s) 286, 303, 655, 814
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 720
BseRI GAGGAG 2 cut(s) 439, 481
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 3 cut(s) 160, 980, 988
BsgI GTGCAG 2 cut(s) 159, 603
BshFI GGCC 1 cut(s) 932
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 2 cut(s) 258, 799
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 1 cut(s) 932
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 3 cut(s) 295, 546, 570
Bsp143I GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
Bsp19I CCATGG 2 cut(s) 286, 814
BspACI CCGC 3 cut(s) 112, 558, 748
BspANI GGCC 1 cut(s) 932
BspCNI CTCAG 1 cut(s) 721
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 292, 403
BspMAI CTGCAG 1 cut(s) 978
BspPI GGATC 2 cut(s) 520, 826
BspT107I GGYRCC 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 4 cut(s) 286, 303, 655, 814
BssMI GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
BssNI GRCGYC 1 cut(s) 652
BssT1I CCWWGG 3 cut(s) 286, 303, 814
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 4 cut(s) 139, 548, 604, 946
BstACI GRCGYC 1 cut(s) 652
BstAFI CTTAAG 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 447, 489, 622
BstDEI CTNAG 2 cut(s) 729, 752
BstDSI CCRYGG 2 cut(s) 286, 814
BstKTI GATC 9 cut(s) 124, 279, 515, 681, 821, 834, 870, 910, 923
BstMBI GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
BstMWI GCNNNNNNNGC 2 cut(s) 173, 774
BstNI CCWGG 1 cut(s) 656
BstNSI RCATGY 2 cut(s) 449, 491
BstSCI CCNGG 2 cut(s) 654, 798
BstSFI CTRYAG 1 cut(s) 974
BstSLI GKGCMC 1 cut(s) 546
BstV1I GCAGC 3 cut(s) 160, 980, 988
BstX2I RGATCY 1 cut(s) 818
BstYI RGATCY 1 cut(s) 818
BsuRI GGCC 1 cut(s) 932
BtgI CCRYGG 2 cut(s) 286, 814
Cac8I GCNNGC 3 cut(s) 447, 489, 622
CaiI CAGNNNCTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 589
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 307, 745
CseI GACGC 1 cut(s) 660
Csp6I GTAC 1 cut(s) 69
CspAI ACCGGT 1 cut(s) 257
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 2 cut(s) 729, 752
DpnI GATC 9 cut(s) 123, 278, 514, 680, 820, 833, 869, 909, 922
DpnII GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
Eco130I CCWWGG 3 cut(s) 286, 303, 814
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 307, 745
Eco88I CYCGRG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 654
EcoT14I CCWWGG 3 cut(s) 286, 303, 814
EcoT22I ATGCAT 2 cut(s) 81, 853
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 3 cut(s) 286, 303, 814
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 34
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 4 cut(s) 112, 174, 969, 977
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 4 cut(s) 112, 174, 969, 977
FspBI CTAG 2 cut(s) 185, 1000
GluI GCNGC 4 cut(s) 112, 174, 969, 977
HaeIII GGCC 1 cut(s) 932
HapII CCGG 2 cut(s) 258, 799
HgaI GACGC 1 cut(s) 660
Hin1I GRCGYC 1 cut(s) 652
HindIII AAGCTT 3 cut(s) 233, 612, 736
HinfI GANTC 4 cut(s) 83, 149, 693, 770
HpaII CCGG 2 cut(s) 258, 799
HphI GGTGA 3 cut(s) 239, 572, 736
Hpy166II GTNNAC 1 cut(s) 955
Hpy188III TCNNGA 4 cut(s) 125, 510, 590, 781
Hpy8I GTNNAC 1 cut(s) 955
HpyAV CCTTC 6 cut(s) 344, 373, 392, 641, 683, 893
HpyCH4III ACNGT 4 cut(s) 139, 548, 604, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 774
HpyF3I CTNAG 2 cut(s) 729, 752
Hsp92I GRCGYC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
LmnI GCTCC 3 cut(s) 290, 573, 902
Lsp1109I GCAGC 3 cut(s) 160, 980, 988
LweI GCATC 3 cut(s) 171, 838, 934
MaeI CTAG 2 cut(s) 185, 1000
MaeIII GTNAC 6 cut(s) 37, 211, 416, 458, 724, 914
MalI GATC 9 cut(s) 123, 278, 514, 680, 820, 833, 869, 909, 922
MboI GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
MboII GAAGA 4 cut(s) 131, 688, 857, 984
MflI RGATCY 1 cut(s) 818
MhlI GDGCHC 3 cut(s) 295, 546, 570
MluCI AATT 3 cut(s) 354, 534, 716
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 9 cut(s) 37, 163, 310, 417, 459, 466, 548, 724, 788
Mph1103I ATGCAT 2 cut(s) 81, 853
MroXI GAANNNNTTC 1 cut(s) 358
MseI TTAA 2 cut(s) 53, 93
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 2 cut(s) 258, 799
MspR9I CCNGG 2 cut(s) 656, 800
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 656
MwoI GCNNNNNNNGC 2 cut(s) 173, 774
NciI CCSGG 1 cut(s) 800
NcoI CCATGG 2 cut(s) 286, 814
NdeII GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
NlaIV GGNNCC 2 cut(s) 292, 403
NmeAIII GCCGAG 1 cut(s) 958
NmuCI GTSAC 4 cut(s) 37, 416, 458, 724
NsiI ATGCAT 2 cut(s) 81, 853
NspI RCATGY 2 cut(s) 449, 491
PaeI GCATGC 2 cut(s) 449, 491
PagI TCATGA 1 cut(s) 589
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 4 cut(s) 83, 149, 693, 770
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 4 cut(s) 113, 175, 970, 978
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 292, 403
PspPI GGNCC 2 cut(s) 307, 745
PstI CTGCAG 1 cut(s) 978
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 818
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 2 cut(s) 53, 93
SatI GCNGC 4 cut(s) 112, 174, 969, 977
Sau3AI GATC 9 cut(s) 121, 276, 512, 678, 818, 831, 867, 907, 920
Sau96I GGNCC 2 cut(s) 307, 745
ScaI AGTACT 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 656, 800
SduI GDGCHC 3 cut(s) 295, 546, 570
SfaNI GCATC 3 cut(s) 171, 838, 934
SfcI CTRYAG 1 cut(s) 974
SinI GGWCC 2 cut(s) 307, 745
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 2 cut(s) 92, 779
SmoI CTYRAG 2 cut(s) 92, 779
SphI GCATGC 2 cut(s) 449, 491
Sse9I AATT 3 cut(s) 354, 534, 716
SsiI CCGC 3 cut(s) 112, 558, 748
SspMI CTAG 2 cut(s) 185, 1000
StyD4I CCNGG 2 cut(s) 654, 798
StyI CCWWGG 3 cut(s) 286, 303, 814
TaaI ACNGT 4 cut(s) 139, 548, 604, 946
TaqI TCGA 2 cut(s) 124, 609
TasI AATT 3 cut(s) 354, 534, 716
TatI WGTACW 1 cut(s) 68
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 4 cut(s) 83, 149, 693, 770
Tru1I TTAA 2 cut(s) 53, 93
Tru9I TTAA 2 cut(s) 53, 93
TseFI GTSAC 4 cut(s) 37, 416, 458, 724
TseI GCWGC 3 cut(s) 173, 968, 976
Tsp45I GTSAC 4 cut(s) 37, 416, 458, 724
TspDTI ATGAA 3 cut(s) 96, 267, 949
TspGWI ACGGA 1 cut(s) 356
Vha464I CTTAAG 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 307, 745
XapI RAATTY 1 cut(s) 716
XceI RCATGY 2 cut(s) 449, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 358
XspI CTAG 2 cut(s) 185, 1000
ZrmI AGTACT 1 cut(s) 70
Zsp2I ATGCAT 2 cut(s) 81, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.