Rh2BG084200

Serine aminopeptidase, S33

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000515
Physical Location & Seq
Reverse (-)
6546859 .. 6547479
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG084200.1

Sequence Viewer

Length: 333 bp
ATGGAGAAGATCAAAAAGGAAGGATTCATTGATATTGGAAGTCCTAAATTTCAGGTGACTGAGGAAAGCTTGATGGACATCCTAAGCACTGATATGCGTGAATCCTGCCTCAAGATTGACAAAGATTGCCGGGTGCTAATAGTCCATGGATCTGCTGATGAGATCGTTCCTGTTGAAAATGCATTTGAGTTTGCCAAGATCATACCTAACCACAAAATACATATTATAGAAGGAGCTGATCATTGTTACAAATCACATCAAGCTGAGTTAGACACAGTTGTTGTGGACTTCATAAAAGCAGCTCTGCAGCAGGACAAGGCTTCTTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

5.11

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47560 AT3G47590 AT3G47590
fragaria_vesca FvH4_1g07650 FvH4_1g07670 FvH4_1g07671 FvH4_1g07680 FvH4_1g07690 FvH4_1g07700 FvH4_1g07700
malus_domestica MD02G1080900.v1.1 MD02G1081000.v1.1 MD02G1081300.v1.1 MD02G1081400.v1.1 MD02G1094000.v1.1 MD15G1208700.v1.1
prunus_persica Prupe.7G208200_v2.0.a1 Prupe.7G208200_v2.0.a1
pyrus_communis pycom02g07440 pycom15g18480
rosa_chinensis RchiOBHm_Chr2g0093511 RchiOBHm_Chr2g0093521 RchiOBHm_Chr2g0093531 RchiOBHm_Chr2g0093541 RchiOBHm_Chr2g0093551 RchiOBHm_Chr2g0093561
rosa_laevigata RLG00000016413 RLG00000016414 RLG00000016415 RLG00000016416 RLG00000016417
rosa_multiflora Rmu_sc0004423.1_g000003 Rmu_sc0004423.1_g000004 Rmu_sc0004423.1_g000005 Rmu_sc0004423.1_g000006 Rmu_sc0006964.1_g000003 Rmu_sc0039672.1_g000001 Rmu_sc0039672.1_g000003
rosa_roxburghii Rroxscaffold_2G00147990 Rroxscaffold_2G00148000 Rroxscaffold_2G00148010 Rroxscaffold_2G00148020 Rroxscaffold_4G00313540
rosa_rugosa Rorug01G0140600.1 Rorug01G0140700.1 Rorug02G0037000 Rorug02G0037100 Rorug02G0037200 Rorug02G0037300 Rorug02G0037400 Rorug02G0037500 Rorug02G0037600
rosa_samantha Rh2AG083400 Rh2AG083500 Rh2AG083700 Rh2AG083800 Rh2AG083900 Rh2AG084000 Rh2BG084200 Rh2BG084300 Rh2BG084400 Rh2BG084500 Rh2BG084600 Rh2CG086300 Rh2CG086400 Rh2CG086500 Rh2CG086700 Rh2CG086800 Rh2CG086900 Rh2DG082200 Rh2DG082300 Rh2DG082400 Rh2DG082500 Rh2DG082600 Rh2DG082700
rosa_wichuraiana Rw1G013200 Rw2G006360 Rw2G006370 Rw2G006380 Rw2G006390 Rw2G006400 Rw2G007130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 47
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 4 cut(s) 69, 236, 263, 302
AluI AGCT 4 cut(s) 69, 236, 263, 302
AlwI GGATC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 299, 307
ApoI RAATTY 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 2 cut(s) 311, 319
BccI CCATC 1 cut(s) 67
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 300, 308
BlsI GCNGC 2 cut(s) 301, 309
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 77
BseMII CTCAG 2 cut(s) 51, 255
BseXI GCAGC 2 cut(s) 311, 319
BsiSI CCGG 1 cut(s) 130
Bsp143I GATC 5 cut(s) 9, 149, 162, 198, 238
Bsp19I CCATGG 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 52, 256
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 5 cut(s) 9, 149, 162, 198, 238
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 60, 83, 264
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 5 cut(s) 12, 152, 165, 201, 241
BstMBI GATC 5 cut(s) 9, 149, 162, 198, 238
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 311, 319
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 87
CviAII CATG 1 cut(s) 146
CviJI RGCY 5 cut(s) 69, 236, 263, 302, 320
CviKI_1 RGCY 5 cut(s) 69, 236, 263, 302, 320
DdeI CTNAG 3 cut(s) 60, 83, 264
DpnI GATC 5 cut(s) 11, 151, 164, 200, 240
DpnII GATC 5 cut(s) 9, 149, 162, 198, 238
Eco130I CCWWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 149
FaiI YATR 6 cut(s) 95, 147, 203, 222, 227, 293
FatI CATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 300, 308
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 300, 308
FspBI CTAG 1 cut(s) 331
GluI GCNGC 2 cut(s) 300, 308
HapII CCGG 1 cut(s) 130
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 2 cut(s) 24, 101
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 14, 224
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 182, 307
HpyF3I CTNAG 3 cut(s) 60, 83, 264
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 5 cut(s) 9, 149, 162, 198, 238
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 38, 118, 143, 183, 296
Lsp1109I GCAGC 2 cut(s) 311, 319
MaeI CTAG 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 55, 245
MalI GATC 5 cut(s) 11, 151, 164, 200, 240
MboI GATC 5 cut(s) 9, 149, 162, 198, 238
MboII GAAGA 2 cut(s) 19, 315
MflI RGATCY 1 cut(s) 149
MluCI AATT 1 cut(s) 47
MnlI CCTC 2 cut(s) 55, 119
Mph1103I ATGCAT 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 131
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 145
NdeII GATC 5 cut(s) 9, 149, 162, 198, 238
NlaIII CATG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 184
PfeI GAWTC 2 cut(s) 24, 101
PkrI GCNGC 2 cut(s) 301, 309
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 2 cut(s) 300, 308
Sau3AI GATC 5 cut(s) 9, 149, 162, 198, 238
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 57, 71, 208, 238, 265, 304
SfcI CTRYAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 47
SspMI CTAG 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 277
TasI AATT 1 cut(s) 47
TfiI GAWTC 2 cut(s) 24, 101
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 299, 307
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 16, 280
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 47
XspI CTAG 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.