Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Reverse (-)

13995779 .. 13997307

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGACATCAATTGAGGCAACAGAAACGCTTAACGCTCCTCCAAAGCTTCAGATCTGGAACAACGCTGCCTTCGACGATGGAGATTCTCAAATCACTTCCGCCATCGAAGCTTCTTCTTGGTCTCACCTCAACGAATCATTCGATTCCGATTGTAGCAAGGAGAATCAGTTTCCGATTTCGGTTTCCTCTTCGCTCCAATCCTCAGTCTCGATCACCGAAGCTCCGTCAGCAAAATCCAAGACCGTGAAGACCAAATCCGCCGCAGATCGGAGTAAAAAGCGAGATATCGATGCAGAGATCGAAGAAGTAGAGAAGGAGATCGGACGATTATCGACGAAATTGGAGTCGCTCCGATTAGAGAAGGCGGAGCAAACCGCAAGAAGCATTGCTATACGTGGAAGAATCGTTCCGGCGAAGTTCATGGAATCATCTCAGAAACAAGTGAAATTCGACGATTCGTGTTTTACAGGATCGAAATCAAGAGCCACTCGTAGAGGCGTTAGTCTTGGACCAGCGGAGATATTCAATTCCGCGAAGAAATCTGAAACTGTGACTCCTCTTCAATCAGCTCAGAATCGACGCAAGTCTTGTTTCTTTAAGCTTCCTGGAATCGAAGAAGGTCAAGTGACGACACGAGGTAAAGGAAGAACGAGTTTGAGTCTGAGTCCGAGATCTCGCAAAGCGAAAATGACGGCAGCTCAGAAGCAAGCAGCTACGACGGTGGGGTCAAAGAGAGCTGTGAAGAAAGAAGAAGGAGTTCTCTTAACAATCCAGCCTAAGAGGCTATTCAAAGAAGATGAAAAGAATGTTTCTTTAAGGAAACCATTGAAACCAGGAAGAGTTGTGGCTAGTAGGTACAGTCAAATGGGTAAAACGCAGACTGGAGAGAAAGATGTTAGGAAAAGGTCGTTGCCTGAGGATGAAGAGAAAGAGAATCATAAGAGGTCGGAGAAGAGAAGAGCTTCTGATGAAAGTAACAAGAGTGAAGGGAGAGTGAAGAAGAGATGGGAGATTCCAAGTGAAGTTGATCTGTATAGCAGTGGTGAGAACGGTGACGAGTCTCCTATAGTTAAGGAGCTACCTAAGATCAGAACGCTTCGTCGTGTGGGAGGGAGCCCTCGTGATTCAGGTGCTGCTAAGAGAGTTGCAGAATTACAAGCCAAGGATCGTAACTTCACTTTTTGCCAGCTTCTGAAGTTTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

402

Amino Acids

44.71

Weight (kDa)

9.77

Isoelectric Point (pI)

67.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	724
AccII	CGCG	1 cut(s)	533
AciI	CCGC	7 cut(s)	99, 258, 261, 365, 375, 515, 531
AclWI	GGATC	2 cut(s)	478, 1173
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	526, 563, 790, 829, 1202
AjnI	CCWGG	2 cut(s)	604, 832
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
Alw26I	GTCTC	3 cut(s)	126, 211, 1065
AlwI	GGATC	2 cut(s)	478, 1173
AlwNI	CAGNNNCTG	2 cut(s)	1133, 1192
ApeKI	GCWGC	4 cut(s)	65, 695, 710, 1133
ApoI	RAATTY	1 cut(s)	446
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
Asp700I	GAANNNNTTC	2 cut(s)	756, 961
AspS9I	GGNCC	1 cut(s)	509
AsuHPI	GGTGA	4 cut(s)	116, 205, 1055, 1064
AvaII	GGWCC	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	915
BanII	GRGCYC	1 cut(s)	1118
BauI	CACGAG	2 cut(s)	633, 1119
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	4 cut(s)	52, 707, 722, 1120
BccI	CCATC	3 cut(s)	71, 110, 999
BceAI	ACGGC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	606, 834
BcoDI	GTCTC	3 cut(s)	126, 211, 1065
BfaI	CTAG	1 cut(s)	849
BfmI	CTRYAG	1 cut(s)	1065
BglI	GCCNNNNNGGC	1 cut(s)	781
BglII	AGATCT	2 cut(s)	51, 671
BisI	GCNGC	5 cut(s)	66, 261, 696, 711, 1134
BlsI	GCNGC	5 cut(s)	67, 262, 697, 712, 1135
Bme1390I	CCNGG	2 cut(s)	606, 834
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	1115
BmrFI	CCNGG	2 cut(s)	606, 834
BmsI	GCATC	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	903
Bsa29I	ATCGAT	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	1161
BsaXI	ACNNNNNCTCC	8 cut(s)	152, 182, 205, 235, 538, 568, 1105, 1135
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	886
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	606, 834
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	1161
BseGI	GGATG	1 cut(s)	925
BseJI	GATNNNNATC	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	6 cut(s)	216, 446, 584, 653, 713, 906
BseNI	ACTGG	1 cut(s)	886
BseRI	GAGGAG	2 cut(s)	27, 546
BseXI	GCAGC	4 cut(s)	52, 707, 722, 1120
Bsh1236I	CGCG	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	3 cut(s)	126, 211, 1065
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	1118
BspACI	CCGC	7 cut(s)	99, 258, 261, 365, 375, 515, 531
BspCNI	CTCAG	6 cut(s)	215, 445, 583, 654, 712, 907
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	1115
BspPI	GGATC	2 cut(s)	478, 1173
BspQI	GCTCTTC	1 cut(s)	952
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	1 cut(s)	1161
BssSI	CACGAG	2 cut(s)	633, 1119
BssT1I	CCWWGG	1 cut(s)	1161
Bst2BI	CACGAG	2 cut(s)	633, 1119
Bst2UI	CCWGG	2 cut(s)	606, 834
Bst4CI	ACNGT	5 cut(s)	244, 550, 721, 860, 1052
Bst6I	CTCTTC	7 cut(s)	193, 564, 832, 918, 947, 952, 995
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	708, 1187
BstDEI	CTNAG	9 cut(s)	202, 432, 570, 662, 699, 777, 915, 1083, 1137
BstF5I	GGATG	1 cut(s)	925
BstFNI	CGCG	1 cut(s)	533
BstMAI	GTCTC	3 cut(s)	126, 211, 1065
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 227, 781
BstNI	CCWGG	2 cut(s)	606, 834
BstPAI	GACNNNNGTC	1 cut(s)	583
BstSCI	CCNGG	2 cut(s)	604, 832
BstSFI	CTRYAG	1 cut(s)	1065
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	4 cut(s)	52, 707, 722, 1120
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	51, 671
BstYI	RGATCY	2 cut(s)	51, 671
Bsu15I	ATCGAT	1 cut(s)	288
Bsu36I	CCTNAGG	1 cut(s)	915
BsuTUI	ATCGAT	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	925
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	1 cut(s)	1045
Cac8I	GCNNGC	2 cut(s)	708, 1187
CaiI	CAGNNNCTG	2 cut(s)	1133, 1192
Cfr13I	GGNCC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	856
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	9 cut(s)	202, 432, 570, 662, 699, 777, 915, 1083, 1137
DrdI	GACNNNNNNGTC	1 cut(s)	724
DseDI	GACNNNNNNGTC	1 cut(s)	724
Eam1104I	CTCTTC	7 cut(s)	193, 564, 832, 918, 947, 952, 995
EarI	CTCTTC	7 cut(s)	193, 564, 832, 918, 947, 952, 995
EciI	GGCGGA	3 cut(s)	88, 247, 380
Eco130I	CCWWGG	1 cut(s)	1161
Eco24I	GRGCYC	1 cut(s)	1118
Eco31I	GGTCTC	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	915
EcoRII	CCWGG	2 cut(s)	604, 832
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	1161
EcoT38I	GRGCYC	1 cut(s)	1118
ErhI	CCWWGG	1 cut(s)	1161
FaeI	CATG	1 cut(s)	424
FaiI	YATR	5 cut(s)	392, 422, 939, 1035, 1067
FatI	CATG	1 cut(s)	420
Fnu4HI	GCNGC	5 cut(s)	66, 261, 696, 711, 1134
FokI	GGATG	1 cut(s)	932
FriOI	GRGCYC	1 cut(s)	1118
Fsp4HI	GCNGC	5 cut(s)	66, 261, 696, 711, 1134
FspBI	CTAG	1 cut(s)	849
GluI	GCNGC	5 cut(s)	66, 261, 696, 711, 1134
GsuI	CTGGAG	1 cut(s)	903
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	424
HindIII	AAGCTT	3 cut(s)	44, 108, 599
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	4 cut(s)	116, 205, 1055, 1064
Hpy188III	TCNNGA	4 cut(s)	55, 208, 480, 1121
Hpy99I	CGWCG	6 cut(s)	77, 337, 455, 582, 721, 1104
HpyAV	CCTTC	6 cut(s)	79, 307, 355, 611, 746, 980
HpyCH4III	ACNGT	5 cut(s)	244, 550, 721, 860, 1052
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	293, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 227, 781
HpyF3I	CTNAG	9 cut(s)	202, 432, 570, 662, 699, 777, 915, 1083, 1137
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	424
LguI	GCTCTTC	1 cut(s)	952
LmnI	GCTCC	7 cut(s)	40, 198, 226, 354, 367, 1075, 1113
Lsp1109I	GCAGC	4 cut(s)	52, 707, 722, 1120
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	849
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	5 cut(s)	550, 625, 974, 1052, 1169
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	2 cut(s)	51, 671
MhlI	GDGCHC	1 cut(s)	1118
MluCI	AATT	5 cut(s)	9, 338, 446, 526, 1151
MlyI	GAGTC	5 cut(s)	353, 547, 667, 673, 1067
MmeI	TCCRAC	1 cut(s)	927
MroXI	GAANNNNTTC	2 cut(s)	756, 961
MseI	TTAA	5 cut(s)	30, 597, 764, 815, 1071
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	606, 834
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	606, 834
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	3 cut(s)	107, 227, 781
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	1115
NmuCI	GTSAC	3 cut(s)	550, 625, 1052
PciSI	GCTCTTC	1 cut(s)	952
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 138
PdmI	GAANNNNTTC	2 cut(s)	756, 961
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	5 cut(s)	67, 262, 697, 712, 1135
PleI	GAGTC	5 cut(s)	352, 547, 666, 672, 1066
PpsI	GAGTC	5 cut(s)	352, 547, 666, 672, 1066
Ppu21I	YACGTR	1 cut(s)	395
PshAI	GACNNNNGTC	1 cut(s)	583
Psp6I	CCWGG	2 cut(s)	604, 832
PspGI	CCWGG	2 cut(s)	604, 832
PspN4I	GGNNCC	1 cut(s)	1115
PspPI	GGNCC	1 cut(s)	509
PstNI	CAGNNNCTG	2 cut(s)	1133, 1192
PsuI	RGATCY	2 cut(s)	51, 671
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
SapI	GCTCTTC	1 cut(s)	952
SaqAI	TTAA	5 cut(s)	30, 597, 764, 815, 1071
SatI	GCNGC	5 cut(s)	66, 261, 696, 711, 1134
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	5 cut(s)	353, 547, 667, 673, 1067
ScrFI	CCNGG	2 cut(s)	606, 834
SduI	GDGCHC	1 cut(s)	1118
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	1065
SinI	GGWCC	1 cut(s)	509
Sse9I	AATT	5 cut(s)	9, 338, 446, 526, 1151
SsiI	CCGC	7 cut(s)	99, 258, 261, 365, 375, 515, 531
SspMI	CTAG	1 cut(s)	849
StyD4I	CCNGG	2 cut(s)	604, 832
StyI	CCWWGG	1 cut(s)	1161
TaaI	ACNGT	5 cut(s)	244, 550, 721, 860, 1052
TaiI	ACGT	1 cut(s)	397
TasI	AATT	5 cut(s)	9, 338, 446, 526, 1151
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	5 cut(s)	30, 597, 764, 815, 1071
Tru9I	TTAA	5 cut(s)	30, 597, 764, 815, 1071
TscAI	CASTG	1 cut(s)	1045
TseFI	GTSAC	3 cut(s)	550, 625, 1052
TseI	GCWGC	4 cut(s)	65, 695, 710, 1133
Tsp45I	GTSAC	3 cut(s)	550, 625, 1052
TspDTI	ATGAA	4 cut(s)	409, 813, 936, 984
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	1045
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	446
XmnI	GAANNNNTTC	2 cut(s)	756, 961
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.