Prupe.3G231100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000643
Physical Location & Seq
Forward (+)
22844123 .. 22846061
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G231100.1

Sequence Viewer

Length: 1377 bp
ATGAGTGTTTTTCAATACCCAGATGCCATTAACGCACAGGACCTTCAAGTGTGGAACAACGCCGCCTTCGACAACGAAGACTCTGAAGGCTCCTCCGCCATCAAAGCTTCTTGGTCTGATCTACTACAACCCCTCTTGCTGAATCGGTCTTCCGAGTCGTTTGAATCCGATTGCAGCAAAGAGAATCTGAGCCCCGCGATTCTGAAAACCCCTGCTTGCGTCAAATCTTCAGTACCCTTTAAGCCGCTGAACACAAATACTAATATTGAGCCATTCTCGGTGGTCGCAAAGAAAAAGGGTCTTGAGGAGGTTGAAGAAAGAGAAGAGAAAGTTCGAGATGAGGGGAAGATTGATATGGAGATTGAAGCAATTGAGAAGGAGATAAGTCGATTGTCTTCGAGGCTCGAAGCGCTTAAACTCGAAAAGGCTGAGAGGAACGAGAAGACAGTAGAAAAGCGTGGAAGGGTTGTGGCGGCGAAGTTCATGGAGCCGAAACAGAGTGTTAAGAATTTAGAGGGGCTAAAAAAGATCGAGTCTTTAATGTTAAGAGCGACACCAAAGAGTAATAGGAGAGGAATGAGTCTGGGACCCTCGGAGATTATAGCTGGAGCCGGATTTCGGAGGCCTAGTAAGCTTGAAATAACCCCTGTTCAGGCAACACAGAGTCGCCGGAAATCTTGCTTTTGGAAGCTTCAGGACATTGATGAATTGAGGGTTACAAAAGAGAGGGGCAAGAGTTTGAGTTTGAGCCCGAAATCGCGTAAAACTGTGTCCAAGGTTCAAGTTCCTAAACAGGCTGCAACTACTGTTGGAGGGTCGAAAAGGCCTGTGAAGAAGGAAGACAAGGTTCTTGCATCAATTGAACCCAAGAAGCTTTTTAAAGATGGAGGTGAGAAGTCTATGGCTGCAAAGAAAACACCATTCAAGGCTGGGAGGGTTGTGGCAAGCAGGTACAATCAGATTGGTAATTCGGCAGTGAGTGATGGCCGGAAGAGGTCTTGGCCTGAGGATGATAAGGATGATGGTAAGAGGTGTGATAAGAGGCGGGTGTCCTTGGTAGGAAAGCCACGTGGCATTGGCCGGGAGACATCAAGGAGCCAAGGGCCGGAGAGCCGGGTGAAGAAGAGGTGGGACATTCCAAGTGAGATAGTGGTGTACCAAGGTGTACAGCAGGAGGATAAGTCACCTTGCAATGTTGCTGAGATGGGTGATGTGCTTCCGAAGATTAGGACTGTCCGATGTGGGAATGATACTCCAAGGGGTTCAGGGCCAGCCAAAAGAGTAGCTGAATTGGCTGGGATGAAGCCCTACTTTAGCACCAAGGAGGAGTTTTGCCAGGAATTGAGTTTTGCAGAAGAAGCTGCTGAGGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

459

Amino Acids

51.02

Weight (kDa)

9.46

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 939
AccII CGCG 2 cut(s) 197, 760
AciI CCGC 6 cut(s) 63, 96, 195, 245, 473, 1045
AcoI YGGCCR 2 cut(s) 985, 1078
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 3 cut(s) 105, 213, 677
AcvI CACGTG 1 cut(s) 1070
AfaI GTAC 4 cut(s) 234, 953, 1157, 1167
AfeI AGCGCT 1 cut(s) 411
AfiI CCNNNNNNNGG 3 cut(s) 618, 652, 1105
AgsI TTSAA 9 cut(s) 14, 47, 164, 314, 365, 638, 782, 863, 925
AjnI CCWGG 1 cut(s) 1335
AluBI AGCT 7 cut(s) 107, 605, 634, 691, 874, 1286, 1361
AluI AGCT 7 cut(s) 107, 605, 634, 691, 874, 1286, 1361
Alw26I GTCTC 1 cut(s) 1079
Aor51HI AGCGCT 1 cut(s) 411
AoxI GGCC 7 cut(s) 623, 824, 985, 1001, 1078, 1103, 1268
ApeKI GCWGC 4 cut(s) 174, 797, 905, 1361
ApoI RAATTY 1 cut(s) 508
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 4 cut(s) 40, 587, 1103, 1268
AsuC2I CCSGG 2 cut(s) 1082, 1115
AsuHPI GGTGA 4 cut(s) 902, 1129, 1176, 1220
AvaII GGWCC 2 cut(s) 40, 587
AxyI CCTNAGG 1 cut(s) 1005
BanII GRGCYC 2 cut(s) 194, 752
BbrPI CACGTG 1 cut(s) 1070
BbsI GAAGAC 5 cut(s) 84, 141, 387, 449, 846
BbvCI CCTCAGC 1 cut(s) 1365
BbvI GCAGC 4 cut(s) 186, 784, 892, 1348
BccI CCATC 5 cut(s) 107, 878, 977, 1016, 1198
BciT130I CCWGG 1 cut(s) 1337
BcnI CCSGG 2 cut(s) 1082, 1115
BcoDI GTCTC 1 cut(s) 1079
BfaI CTAG 1 cut(s) 627
BfoI RGCGCY 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 939
BisI GCNGC 7 cut(s) 63, 175, 245, 474, 798, 906, 1362
BlsI GCNGC 7 cut(s) 64, 176, 246, 475, 799, 907, 1363
Bme1390I CCNGG 3 cut(s) 1082, 1115, 1337
Bme18I GGWCC 2 cut(s) 40, 587
BmgT120I GGNCC 4 cut(s) 40, 587, 1103, 1268
BmiI GGNNCC 6 cut(s) 91, 489, 588, 589, 610, 1097
BmrFI CCNGG 3 cut(s) 1082, 1115, 1337
BmsI GCATC 2 cut(s) 13, 863
BpiI GAAGAC 5 cut(s) 84, 141, 387, 449, 846
BplI GAGNNNNNCTC 2 cut(s) 260, 292
BpmI CTGGAG 1 cut(s) 627
Bpu10I CCTNAGC 1 cut(s) 1365
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 2 cut(s) 1082, 1115
BsaAI YACGTR 1 cut(s) 1070
BsaJI CCNNGG 7 cut(s) 591, 774, 1053, 1099, 1159, 1256, 1320
BsaXI ACNNNNNCTCC 4 cut(s) 613, 643, 1166, 1196
Bsc4I CCNNNNNNNGG 3 cut(s) 618, 652, 1105
Bse21I CCTNAGG 1 cut(s) 1005
Bse3DI GCAATG 1 cut(s) 1198
BseBI CCWGG 1 cut(s) 1337
BseDI CCNNGG 7 cut(s) 591, 774, 1053, 1099, 1159, 1256, 1320
BseGI GGATG 3 cut(s) 1015, 1024, 1305
BseLI CCNNNNNNNGG 3 cut(s) 618, 652, 1105
BseMI GCAATG 1 cut(s) 1198
BseMII CTCAG 5 cut(s) 179, 420, 996, 1191, 1356
BseRI GAGGAG 3 cut(s) 82, 320, 1340
BseXI GCAGC 4 cut(s) 186, 784, 892, 1348
BseYI CCCAGC 2 cut(s) 929, 1295
Bsh1236I CGCG 2 cut(s) 197, 760
BshFI GGCC 7 cut(s) 625, 826, 987, 1003, 1080, 1105, 1270
BsiSI CCGG 6 cut(s) 612, 670, 988, 1081, 1106, 1114
BslFI GGGAC 2 cut(s) 600, 1145
BslI CCNNNNNNNGG 3 cut(s) 618, 652, 1105
BsmAI GTCTC 1 cut(s) 1079
BsmFI GGGAC 2 cut(s) 600, 1145
BsnI GGCC 7 cut(s) 625, 826, 987, 1003, 1080, 1105, 1270
Bsp1286I GDGCHC 2 cut(s) 194, 752
Bsp1407I TGTACA 1 cut(s) 1165
Bsp143I GATC 2 cut(s) 118, 528
BspACI CCGC 6 cut(s) 63, 96, 195, 245, 473, 1045
BspANI GGCC 7 cut(s) 625, 826, 987, 1003, 1080, 1105, 1270
BspCNI CTCAG 5 cut(s) 180, 421, 997, 1192, 1357
BspFNI CGCG 2 cut(s) 197, 760
BspLI GGNNCC 6 cut(s) 91, 489, 588, 589, 610, 1097
BspMI ACCTGC 1 cut(s) 939
BsrDI GCAATG 1 cut(s) 1198
BsrGI TGTACA 1 cut(s) 1165
BssECI CCNNGG 7 cut(s) 591, 774, 1053, 1099, 1159, 1256, 1320
BssMI GATC 2 cut(s) 118, 528
BssT1I CCWWGG 6 cut(s) 774, 1053, 1099, 1159, 1256, 1320
Bst2UI CCWGG 1 cut(s) 1337
Bst4CI ACNGT 4 cut(s) 448, 769, 808, 1234
Bst6I CTCTTC 3 cut(s) 318, 986, 1118
BstAUI TGTACA 1 cut(s) 1165
BstBAI YACGTR 1 cut(s) 1070
BstC8I GCNNGC 3 cut(s) 217, 946, 1272
BstDEI CTNAG 5 cut(s) 188, 429, 1005, 1200, 1365
BstF5I GGATG 3 cut(s) 1015, 1024, 1305
BstFNI CGCG 2 cut(s) 197, 760
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 2 cut(s) 121, 531
BstMAI GTCTC 1 cut(s) 1079
BstMBI GATC 2 cut(s) 118, 528
BstMWI GCNNNNNNNGC 6 cut(s) 32, 104, 409, 631, 1292, 1358
BstNI CCWGG 1 cut(s) 1337
BstSCI CCNGG 3 cut(s) 1080, 1113, 1335
BstUI CGCG 2 cut(s) 197, 760
BstV1I GCAGC 4 cut(s) 186, 784, 892, 1348
BstV2I GAAGAC 5 cut(s) 84, 141, 387, 449, 846
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 7 cut(s) 625, 826, 987, 1003, 1080, 1105, 1270
BtsCI GGATG 3 cut(s) 1015, 1024, 1305
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 1 cut(s) 981
BveI ACCTGC 1 cut(s) 939
Cac8I GCNNGC 3 cut(s) 217, 946, 1272
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 4 cut(s) 40, 587, 1103, 1268
CseI GACGC 1 cut(s) 208
Csp6I GTAC 4 cut(s) 233, 952, 1156, 1166
CviAII CATG 1 cut(s) 484
CviQI GTAC 4 cut(s) 233, 952, 1156, 1166
DdeI CTNAG 5 cut(s) 188, 429, 1005, 1200, 1365
DpnI GATC 2 cut(s) 120, 530
DpnII GATC 2 cut(s) 118, 528
DraI TTTAAA 1 cut(s) 880
EaeI YGGCCR 2 cut(s) 985, 1078
Eam1104I CTCTTC 3 cut(s) 318, 986, 1118
EarI CTCTTC 3 cut(s) 318, 986, 1118
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 6 cut(s) 774, 1053, 1099, 1159, 1256, 1320
Eco147I AGGCCT 2 cut(s) 625, 826
Eco24I GRGCYC 2 cut(s) 194, 752
Eco47I GGWCC 2 cut(s) 40, 587
Eco47III AGCGCT 1 cut(s) 411
Eco57I CTGAAG 3 cut(s) 105, 213, 677
Eco72I CACGTG 1 cut(s) 1070
Eco81I CCTNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 2 cut(s) 40, 587
EcoRII CCWGG 1 cut(s) 1335
EcoT14I CCWWGG 6 cut(s) 774, 1053, 1099, 1159, 1256, 1320
EcoT38I GRGCYC 2 cut(s) 194, 752
ErhI CCWWGG 6 cut(s) 774, 1053, 1099, 1159, 1256, 1320
FaeI CATG 1 cut(s) 487
FaiI YATR 4 cut(s) 356, 485, 602, 902
FalI AAGNNNNNCTT 2 cut(s) 1295, 1327
FaqI GGGAC 2 cut(s) 600, 1145
FatI CATG 1 cut(s) 483
FauI CCCGC 2 cut(s) 202, 1038
Fnu4HI GCNGC 7 cut(s) 63, 175, 245, 474, 798, 906, 1362
FokI GGATG 3 cut(s) 1022, 1031, 1312
FriOI GRGCYC 2 cut(s) 194, 752
Fsp4HI GCNGC 7 cut(s) 63, 175, 245, 474, 798, 906, 1362
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 411
GluI GCNGC 7 cut(s) 63, 175, 245, 474, 798, 906, 1362
GsaI CCCAGC 2 cut(s) 933, 1299
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 7 cut(s) 625, 826, 987, 1003, 1080, 1105, 1270
HapII CCGG 6 cut(s) 612, 670, 988, 1081, 1106, 1114
HgaI GACGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 412
Hin1II CATG 1 cut(s) 487
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 4 cut(s) 105, 632, 689, 872
HinfI GANTC 9 cut(s) 80, 142, 155, 164, 184, 199, 533, 580, 664
HpaII CCGG 6 cut(s) 612, 670, 988, 1081, 1106, 1114
HphI GGTGA 4 cut(s) 902, 1129, 1176, 1220
Hpy166II GTNNAC 2 cut(s) 1156, 1166
Hpy188III TCNNGA 3 cut(s) 302, 335, 695
Hpy8I GTNNAC 2 cut(s) 1156, 1166
HpyAV CCTTC 6 cut(s) 53, 76, 80, 370, 456, 829
HpyCH4III ACNGT 4 cut(s) 448, 769, 808, 1234
HpyCH4IV ACGT 1 cut(s) 1069
HpyCH4V TGCA 6 cut(s) 174, 800, 854, 908, 1191, 1352
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 104, 409, 631, 1292, 1358
HpyF3I CTNAG 5 cut(s) 188, 429, 1005, 1200, 1365
HpySE526I ACGT 1 cut(s) 1069
Hsp92II CATG 1 cut(s) 487
HspAI GCGC 1 cut(s) 410
KflI GGGWCCC 1 cut(s) 587
Kzo9I GATC 2 cut(s) 118, 528
LmnI GCTCC 4 cut(s) 95, 487, 608, 1095
Lsp1109I GCAGC 4 cut(s) 186, 784, 892, 1348
LweI GCATC 2 cut(s) 13, 863
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 1069
MaeIII GTNAC 2 cut(s) 715, 1182
MalI GATC 2 cut(s) 120, 530
MboI GATC 2 cut(s) 118, 528
MfeI CAATTG 2 cut(s) 369, 858
MhlI GDGCHC 2 cut(s) 194, 752
MluCI AATT 7 cut(s) 369, 508, 707, 858, 967, 1289, 1340
MlyI GAGTC 5 cut(s) 74, 164, 542, 589, 673
MmeI TCCRAC 1 cut(s) 790
MseI TTAA 7 cut(s) 30, 240, 414, 504, 539, 545, 879
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 6 cut(s) 612, 670, 988, 1081, 1106, 1114
MspR9I CCNGG 3 cut(s) 1082, 1115, 1337
MunI CAATTG 2 cut(s) 369, 858
MvaI CCWGG 1 cut(s) 1337
MvnI CGCG 2 cut(s) 197, 760
MwoI GCNNNNNNNGC 6 cut(s) 32, 104, 409, 631, 1292, 1358
NciI CCSGG 2 cut(s) 1082, 1115
NdeII GATC 2 cut(s) 118, 528
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 6 cut(s) 91, 489, 588, 589, 610, 1097
NmuCI GTSAC 1 cut(s) 1182
PceI AGGCCT 2 cut(s) 625, 826
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 4 cut(s) 142, 164, 184, 199
PkrI GCNGC 7 cut(s) 64, 176, 246, 475, 799, 907, 1363
PleI GAGTC 5 cut(s) 74, 163, 541, 588, 672
PmaCI CACGTG 1 cut(s) 1070
PmlI CACGTG 1 cut(s) 1070
PpsI GAGTC 5 cut(s) 74, 163, 541, 588, 672
Ppu21I YACGTR 1 cut(s) 1070
PpuMI RGGWCCY 2 cut(s) 40, 587
Psp5II RGGWCCY 2 cut(s) 40, 587
Psp6I CCWGG 1 cut(s) 1335
PspCI CACGTG 1 cut(s) 1070
PspFI CCCAGC 2 cut(s) 929, 1295
PspGI CCWGG 1 cut(s) 1335
PspN4I GGNNCC 6 cut(s) 91, 489, 588, 589, 610, 1097
PspPI GGNCC 4 cut(s) 40, 587, 1103, 1268
PspPPI RGGWCCY 2 cut(s) 40, 587
RsaI GTAC 4 cut(s) 234, 953, 1157, 1167
RsaNI GTAC 4 cut(s) 233, 952, 1156, 1166
SaqAI TTAA 7 cut(s) 30, 240, 414, 504, 539, 545, 879
SatI GCNGC 7 cut(s) 63, 175, 245, 474, 798, 906, 1362
Sau3AI GATC 2 cut(s) 118, 528
Sau96I GGNCC 4 cut(s) 40, 587, 1103, 1268
SchI GAGTC 5 cut(s) 74, 164, 542, 589, 673
ScrFI CCNGG 3 cut(s) 1082, 1115, 1337
SduI GDGCHC 2 cut(s) 194, 752
SfaNI GCATC 2 cut(s) 13, 863
SinI GGWCC 2 cut(s) 40, 587
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 7 cut(s) 369, 508, 707, 858, 967, 1289, 1340
SseBI AGGCCT 2 cut(s) 625, 826
SsiI CCGC 6 cut(s) 63, 96, 195, 245, 473, 1045
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 627
StuI AGGCCT 2 cut(s) 625, 826
StyD4I CCNGG 3 cut(s) 1080, 1113, 1335
StyI CCWWGG 6 cut(s) 774, 1053, 1099, 1159, 1256, 1320
TaaI ACNGT 4 cut(s) 448, 769, 808, 1234
TaiI ACGT 1 cut(s) 1072
TaqI TCGA 8 cut(s) 69, 334, 388, 398, 405, 420, 531, 818
TaqII GACCGA 1 cut(s) 135
TasI AATT 7 cut(s) 369, 508, 707, 858, 967, 1289, 1340
TatI WGTACW 1 cut(s) 1165
TauI GCSGC 3 cut(s) 65, 247, 476
TfiI GAWTC 4 cut(s) 142, 164, 184, 199
Tru1I TTAA 7 cut(s) 30, 240, 414, 504, 539, 545, 879
Tru9I TTAA 7 cut(s) 30, 240, 414, 504, 539, 545, 879
TscAI CASTG 1 cut(s) 981
TseFI GTSAC 1 cut(s) 1182
TseI GCWGC 4 cut(s) 174, 797, 905, 1361
Tsp45I GTSAC 1 cut(s) 1182
TspDTI ATGAA 3 cut(s) 472, 720, 1316
TspRI CASTG 1 cut(s) 981
VpaK11BI GGWCC 2 cut(s) 40, 587
XapI RAATTY 1 cut(s) 508
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.