Rh1CG025800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000643
Physical Location & Seq
Forward (+)
4963522 .. 4963764
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG025800.1

Sequence Viewer

Length: 243 bp
ATGCTGTTTAAGCTGCTGAACGAAAATTCGCGGCAGCTATTGGTGGCGCCGAAGAAGATGGGGTTTGAGGTTGAAGAAGAGAAAGGTCGAGACCTAGGGAAGATCTATTCGGAGATTGAGGAAATTGAGAAAGAGATAAGCCGATTGAATTCGAGGCTGGAATTGCGGAAACTAGTGAAGGCCCAGAAAGTGGTAGAGAAGCTCGACAGAGTTGTGGCGGCGAATTTCATGGAACCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.33

Weight (kDa)

7.97

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 190
AccII CGCG 1 cut(s) 31
AciI CCGC 3 cut(s) 31, 166, 218
AcsI RAATTY 3 cut(s) 25, 148, 223
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 74, 148
AhlI ACTAGT 1 cut(s) 172
AluBI AGCT 3 cut(s) 13, 37, 202
AluI AGCT 3 cut(s) 13, 37, 202
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 13, 34
ApoI RAATTY 3 cut(s) 25, 148, 223
AspA2I CCTAGG 1 cut(s) 94
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 181
AvrII CCTAGG 1 cut(s) 94
BanI GGYRCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 2 cut(s) 95, 173
BfoI RGCGCY 1 cut(s) 50
BglII AGATCT 1 cut(s) 102
BisI GCNGC 4 cut(s) 14, 32, 35, 219
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 4 cut(s) 15, 33, 36, 220
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 48, 234
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 3 cut(s) 31, 166, 218
BspANI GGCC 1 cut(s) 182
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 48, 234
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 47
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 10, 163
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 1 cut(s) 182
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 181
CviAII CATG 1 cut(s) 229
CviJI RGCY 6 cut(s) 13, 37, 141, 157, 182, 202
CviKI_1 RGCY 6 cut(s) 13, 37, 141, 157, 182, 202
DinI GGCGCC 1 cut(s) 48
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 230, 241
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 14, 32, 35, 219
Fsp4HI GCNGC 4 cut(s) 14, 32, 35, 219
FspBI CTAG 2 cut(s) 95, 173
GlaI GCGC 1 cut(s) 48
GluI GCNGC 4 cut(s) 14, 32, 35, 219
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 1 cut(s) 182
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 163
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 47
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 143, 197
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 2 cut(s) 95, 173
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 5 cut(s) 64, 67, 86, 89, 112
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 25, 123, 148, 161, 223
Mly113I GGCGCC 1 cut(s) 47
MnlI CCTC 3 cut(s) 61, 112, 147
MseI TTAA 1 cut(s) 9
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 10, 163
NarI GGCGCC 1 cut(s) 47
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 48, 234
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 4 cut(s) 15, 33, 36, 220
PluTI GGCGCC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 48, 234
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 102
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 4 cut(s) 14, 32, 35, 219
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 181
SetI ASST 7 cut(s) 15, 39, 72, 88, 96, 204, 238
SfoI GGCGCC 1 cut(s) 48
SgeI CNNG 8 cut(s) 42, 101, 107, 165, 170, 185, 196, 215
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 5 cut(s) 25, 123, 148, 161, 223
SsiI CCGC 3 cut(s) 31, 166, 218
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 2 cut(s) 95, 173
StyI CCWWGG 1 cut(s) 94
TaqI TCGA 3 cut(s) 88, 152, 204
TasI AATT 5 cut(s) 25, 123, 148, 161, 223
TauI GCSGC 2 cut(s) 34, 221
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 2 cut(s) 13, 34
TspDTI ATGAA 2 cut(s) 217, 228
Van91I CCANNNNNTGG 1 cut(s) 190
XapI RAATTY 3 cut(s) 25, 148, 223
XmaJI CCTAGG 1 cut(s) 94
XspI CTAG 2 cut(s) 95, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.