Rh1AG028300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000643
Physical Location & Seq
Forward (+)
5111232 .. 5111474
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG028300.1

Sequence Viewer

Length: 243 bp
ATGCCGTTTAAGCGGTTGAACGAAAATTCGCCGCGGCTATCGGTGGCGCCGAAAAAGATGGGGTTTGAGGTTGAAGAAGAGAAGGGTCAAGACCTGAGGAAGATCTATTCGAAGATTGAGGAAATTGAAAAGGAGATAAGCCGATTGAATTCGAGGCTGGAATTGCAAAAACTAGTGAAGGCCCAGAAGGTGGTGGAGAAGTGCGGCAGAGTTGTGGCGGCGAATTTCATGGAGCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.28

Weight (kDa)

9.37

Isoelectric Point (pI)

70.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 190
AccII CGCG 1 cut(s) 34
AciI CCGC 5 cut(s) 13, 32, 34, 204, 218
AcsI RAATTY 3 cut(s) 25, 148, 223
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 4 cut(s) 19, 74, 128, 148
AhlI ACTAGT 1 cut(s) 172
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 3 cut(s) 25, 148, 223
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 95
BanI GGYRCC 1 cut(s) 46
BccI CCATC 1 cut(s) 52
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 50
BglII AGATCT 1 cut(s) 102
BisI GCNGC 4 cut(s) 32, 35, 205, 219
BlsI GCNGC 4 cut(s) 33, 36, 206, 220
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 48, 234
Bpu14I TTCGAA 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 110
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 5 cut(s) 13, 32, 34, 204, 218
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 48, 234
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 10, 163
BstUI CGCG 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 32
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 181
Cfr42I CCGCGG 1 cut(s) 35
CviAII CATG 1 cut(s) 229
CviJI RGCY 5 cut(s) 37, 141, 157, 182, 235
CviKI_1 RGCY 5 cut(s) 37, 141, 157, 182, 235
DdeI CTNAG 1 cut(s) 95
DinI GGCGCC 1 cut(s) 48
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco81I CCTNAGG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 148
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 230, 241
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 32, 35, 205, 219
Fsp4HI GCNGC 4 cut(s) 32, 35, 205, 219
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 48
GluI GCNGC 4 cut(s) 32, 35, 205, 219
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 1 cut(s) 182
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 76, 172, 181
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 163
HpyF3I CTNAG 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 47
KasI GGCGCC 1 cut(s) 46
KspI CCGCGG 1 cut(s) 35
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 3 cut(s) 107, 143, 197
MaeI CTAG 1 cut(s) 173
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 4 cut(s) 86, 89, 112, 124
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 25, 123, 148, 161, 223
Mly113I GGCGCC 1 cut(s) 47
MnlI CCTC 4 cut(s) 61, 90, 112, 147
MseI TTAA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 34
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 10, 163
NarI GGCGCC 1 cut(s) 47
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 48, 234
NspV TTCGAA 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 4 cut(s) 33, 36, 206, 220
PluTI GGCGCC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 48, 234
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 102
SacII CCGCGG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 4 cut(s) 32, 35, 205, 219
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 181
SetI ASST 3 cut(s) 72, 96, 192
SfoI GGCGCC 1 cut(s) 48
Sfr303I CCGCGG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 110
SgeI CNNG 7 cut(s) 45, 101, 106, 165, 170, 185, 196
SgrBI CCGCGG 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 5 cut(s) 25, 123, 148, 161, 223
SsiI CCGC 5 cut(s) 13, 32, 34, 204, 218
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 1 cut(s) 173
TaqI TCGA 2 cut(s) 110, 152
TasI AATT 5 cut(s) 25, 123, 148, 161, 223
TauI GCSGC 4 cut(s) 34, 37, 207, 221
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 217, 228
Van91I CCANNNNNTGG 1 cut(s) 190
XapI RAATTY 3 cut(s) 25, 148, 223
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.