FvH4_6g12751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000643
Physical Location & Seq
Reverse (-)
7724025 .. 7724476
452 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12751.t1

Sequence Viewer

Length: 360 bp
ATGGTCATGCACAATTATCTGTGTATTGATGTTAAGGGCCAGTACTATATCTTTCATTTGTCATTTGGAATCGGCGAACGAGCTGTAGAGAGCATCATCTTTGGTCTGCACGCGCTTAGTCTTGCGGTTGCAGTAATAAAACTCGTCCCCAATCCACTGGTTCTCCATTTTGAACCTATCCATCTCCTGATAATCATCCATGTTTGGATTGGTTTTGAGGTTGAAGAGGAGAAAGGTCGAAATTCAGGGAAGATCGAGAAAGAGATAAGCCTACTGAATTCGAGGCTGGAGTGGCTGAAACTCAAGAAGGCGGCGGAGAGGCGCGGCAGAGTGGTGGTGGCGAAGTTCATGCAGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.64

Weight (kDa)

9.13

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 113, 324
AciI CCGC 4 cut(s) 125, 311, 314, 324
AcsI RAATTY 2 cut(s) 241, 277
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 2 cut(s) 173, 224
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 2 cut(s) 241, 277
AspLEI GCGC 2 cut(s) 115, 324
AspS9I GGNCC 1 cut(s) 37
BccI CCATC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 340
BcgI CGANNNNNNTGC 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 312, 325, 353
BlsI GCNGC 3 cut(s) 313, 326, 354
BmcAI AGTACT 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 2 cut(s) 40, 162
Bse8I GATNNNNATC 1 cut(s) 194
BseGI GGATG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 194
BseNI ACTGG 2 cut(s) 40, 162
BseRI GAGGAG 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 92
Bsh1236I CGCG 2 cut(s) 113, 324
BshFI GGCC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 4 cut(s) 125, 311, 314, 324
BspANI GGCC 1 cut(s) 39
BspFNI CGCG 2 cut(s) 113, 324
BsrI ACTGG 2 cut(s) 40, 162
BssMI GATC 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 2 cut(s) 113, 324
BstHHI GCGC 2 cut(s) 115, 324
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 2 cut(s) 113, 324
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 2 cut(s) 115, 324
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 7, 200, 349
CviJI RGCY 6 cut(s) 39, 83, 270, 286, 295, 355
CviKI_1 RGCY 6 cut(s) 39, 83, 270, 286, 295, 355
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 277
FaeI CATG 3 cut(s) 10, 203, 352
FaiI YATR 4 cut(s) 8, 48, 201, 350
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 6, 199, 348
Fnu4HI GCNGC 3 cut(s) 312, 325, 353
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 312, 325, 353
GlaI GCGC 2 cut(s) 114, 323
GluI GCNGC 3 cut(s) 312, 325, 353
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 39
HhaI GCGC 2 cut(s) 115, 324
Hin1II CATG 3 cut(s) 10, 203, 352
Hin6I GCGC 2 cut(s) 113, 322
HinP1I GCGC 2 cut(s) 113, 322
HinfI GANTC 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 187, 256, 304
HpyAV CCTTC 1 cut(s) 301
HpyCH4V TGCA 4 cut(s) 10, 109, 131, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 3 cut(s) 10, 203, 352
HspAI GCGC 2 cut(s) 113, 322
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 5 cut(s) 53, 143, 200, 231, 272
LweI GCATC 1 cut(s) 102
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 236, 262
MluCI AATT 3 cut(s) 13, 241, 277
MnlI CCTC 4 cut(s) 211, 220, 276, 312
MseI TTAA 1 cut(s) 33
MvnI CGCG 2 cut(s) 113, 324
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 10, 203, 352
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 313, 326, 354
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 312, 325, 353
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 44
SetI ASST 4 cut(s) 85, 178, 222, 238
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 13, 241, 277
SsiI CCGC 4 cut(s) 125, 311, 314, 324
TaqI TCGA 3 cut(s) 238, 255, 281
TasI AATT 3 cut(s) 13, 241, 277
TatI WGTACW 1 cut(s) 42
TauI GCSGC 2 cut(s) 314, 327
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 44, 337
TspRI CASTG 1 cut(s) 162
XapI RAATTY 2 cut(s) 241, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.