Rmu_sc0026352.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026352.1
OG0000643
Physical Location & Seq
Forward (+)
10633 .. 12707
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026352.1_g000003.1.cds

Sequence Viewer

Length: 489 bp
atggttagtcgccaataccctctagccattgcctcttcatattctgatcagcaggaccatccgatgcttcacctggtcagcagtaccttccagagctttaggtctggaacaacaccgccttcgacgatagtgagggctctaaagtctctggcgttgttgttaaaccttcatggtctttcgaatctgattgcagcaaaagtgaatctgagcccggtcttcgctgcatcttcggtgccctttaagccactgaacggaaacacacgacggttatcgttggccccaaagaagatgggttttgaaattgaagaagagaaaggtcgagacttggggaagatcgatttggatattgaggaaatcgagaaagagataactcgattggaactcatggaacgaaggaccttgaaacgagggacagaggaagcttgtggaacgaaggagcttgaaactccaagaatcgtcgagctaatgatgatgaagcattgtctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.15

Weight (kDa)

8.58

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 1 cut(s) 116
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 4 cut(s) 299, 305, 403, 443
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 4 cut(s) 96, 422, 439, 463
AluI AGCT 4 cut(s) 96, 422, 439, 463
Alw26I GTCTC 2 cut(s) 150, 315
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 2 cut(s) 191, 221
AspS9I GGNCC 3 cut(s) 55, 277, 396
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 62
AsuII TTCGAA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 55, 396
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 139, 212
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 203, 208
BccI CCATC 2 cut(s) 66, 283
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 150, 315
BfaI CTAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 192, 222
BlsI GCNGC 2 cut(s) 193, 223
Bme1390I CCNGG 2 cut(s) 74, 212
Bme18I GGWCC 2 cut(s) 55, 396
BmgT120I GGNCC 3 cut(s) 55, 277, 396
BmiI GGNNCC 2 cut(s) 234, 279
BmrFI CCNGG 2 cut(s) 74, 212
BmsI GCATC 2 cut(s) 54, 233
BpiI GAAGAC 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 336
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 2 cut(s) 203, 208
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 336
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 150, 315
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 139, 212, 237
Bsp143I GATC 2 cut(s) 46, 333
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 198
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 234, 279
BspT104I TTCGAA 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 27
BssMI GATC 2 cut(s) 46, 333
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 40, 303
BstBI TTCGAA 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 2 cut(s) 49, 336
BstMAI GTCTC 2 cut(s) 150, 315
BstMBI GATC 2 cut(s) 46, 333
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 72, 210
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 203, 208
BstV2I GAAGAC 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 55, 277, 396
ClaI ATCGAT 1 cut(s) 336
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 84
CviAII CATG 2 cut(s) 170, 385
CviJI RGCY 9 cut(s) 26, 96, 137, 210, 244, 278, 422, 439, 463
CviKI_1 RGCY 9 cut(s) 26, 96, 137, 210, 244, 278, 422, 439, 463
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 48, 335
DpnII GATC 2 cut(s) 46, 333
Eam1104I CTCTTC 2 cut(s) 40, 303
EarI CTCTTC 2 cut(s) 40, 303
Eco24I GRGCYC 2 cut(s) 139, 212
Eco47I GGWCC 2 cut(s) 55, 396
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 2 cut(s) 139, 212
FaeI CATG 2 cut(s) 173, 388
FaiI YATR 3 cut(s) 40, 171, 386
FaqI GGGAC 1 cut(s) 424
FatI CATG 2 cut(s) 169, 384
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 192, 222
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 2 cut(s) 139, 212
Fsp4HI GCNGC 2 cut(s) 192, 222
FspBI CTAG 1 cut(s) 23
GluI GCNGC 2 cut(s) 192, 222
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 212
Hin1II CATG 2 cut(s) 173, 388
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 3 cut(s) 181, 202, 453
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 4 cut(s) 46, 63, 186, 207
Hpy188III TCNNGA 4 cut(s) 91, 105, 320, 358
Hpy99I CGWCG 3 cut(s) 127, 267, 461
HpyAV CCTTC 5 cut(s) 97, 129, 176, 387, 427
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 191, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 173, 388
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 333
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 7 cut(s) 38, 59, 86, 90, 104, 134, 225
Lsp1109I GCAGC 2 cut(s) 203, 208
LweI GCATC 2 cut(s) 54, 233
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 1 cut(s) 23
MalI GATC 2 cut(s) 48, 335
MboI GATC 2 cut(s) 46, 333
MboII GAAGA 7 cut(s) 27, 208, 219, 298, 317, 320, 343
MhlI GDGCHC 3 cut(s) 139, 212, 237
MluCI AATT 1 cut(s) 300
MnlI CCTC 6 cut(s) 30, 43, 126, 343, 401, 409
MseI TTAA 2 cut(s) 161, 240
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 74, 212
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 46, 333
NlaIII CATG 2 cut(s) 173, 388
NlaIV GGNNCC 2 cut(s) 234, 279
NspV TTCGAA 1 cut(s) 179
PfeI GAWTC 3 cut(s) 181, 202, 453
PkrI GCNGC 2 cut(s) 193, 223
PpuMI RGGWCCY 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 234, 279
PspPI GGNCC 3 cut(s) 55, 277, 396
PspPPI RGGWCCY 1 cut(s) 396
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 161, 240
SatI GCNGC 2 cut(s) 192, 222
Sau3AI GATC 2 cut(s) 46, 333
Sau96I GGNCC 3 cut(s) 55, 277, 396
ScrFI CCNGG 2 cut(s) 74, 212
SduI GDGCHC 3 cut(s) 139, 212, 237
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 2 cut(s) 54, 233
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 2 cut(s) 55, 396
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 72, 210
TaaI ACNGT 1 cut(s) 267
TaqI TCGA 7 cut(s) 122, 179, 319, 336, 357, 373, 459
TasI AATT 1 cut(s) 300
TfiI GAWTC 3 cut(s) 181, 202, 453
Tru1I TTAA 2 cut(s) 161, 240
Tru9I TTAA 2 cut(s) 161, 240
TscAI CASTG 1 cut(s) 252
TseI GCWGC 2 cut(s) 191, 221
TspDTI ATGAA 3 cut(s) 27, 158, 488
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 252
VpaK11BI GGWCC 2 cut(s) 55, 396
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.