Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

34546001 .. 34550374

Gene Structure 4374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCGGAGAAACAAGCACAAATATTTTTGGAATAGTGCAAATTGTTTCTCGCTGATGTTCAGATTCAGTCTATATATCCATTGCATGATGTTTCTGAGCTGGAACAAAGGCTTACAGAACAATCAAAGATACTCTCAAGTCTTCAACAACAGGTTGATGATTTGGCATCAAAGTGCTGCTCATGAGGAGTATGCAGAGGTAGAATCCATATTGCGTTCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATATGATTTACACCAAGGAAATTCATCCCTGGACACACATGATGGAGGTACCCCAGCTCCCTGGGTTCGGGCCAGCTGCCATTCCCTTGTTGGAGGCATATAAGATGCTTTTGAAGATATCTACAGAGGTTTCATGGGGTTTGATTCCTTTCATCACTGCCCTTTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

142

Amino Acids

16.88

Weight (kDa)

8.98

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	51 - 127	9.4e-32	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	276
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	145, 256, 370
AjnI	CCWGG	2 cut(s)	284, 316
AluBI	AGCT	3 cut(s)	99, 313, 332
AluI	AGCT	3 cut(s)	99, 313, 332
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	176, 332
ApoI	RAATTY	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	163, 319
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	286, 318
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	177, 333
BlsI	GCNGC	2 cut(s)	178, 334
Bme1390I	CCNGG	2 cut(s)	286, 318
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	286, 318
BmsI	GCATC	2 cut(s)	175, 351
BpiI	GAAGAC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	270, 284, 316, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	286, 318
BseDI	CCNNGG	4 cut(s)	270, 284, 316, 317
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	163, 319
BseYI	CCCAGC	1 cut(s)	309
BshFI	GGCC	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	323
BsnI	GGCC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	79
BssECI	CCNNGG	4 cut(s)	270, 284, 316, 317
BssMI	GATC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	286, 318
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	286, 318
BstSCI	CCNGG	2 cut(s)	284, 316
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	163, 319
BstV2I	GAAGAC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	4 cut(s)	85, 182, 295, 390
CviJI	RGCY	5 cut(s)	99, 111, 313, 328, 332
CviKI_1	RGCY	5 cut(s)	99, 111, 313, 328, 332
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	284, 316
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	4 cut(s)	88, 185, 298, 393
FatI	CATG	4 cut(s)	84, 181, 294, 389
Fnu4HI	GCNGC	2 cut(s)	177, 333
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	177, 333
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	2 cut(s)	177, 333
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	328
Hin1II	CATG	4 cut(s)	88, 185, 298, 393
HinfI	GANTC	4 cut(s)	63, 203, 227, 400
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	62, 96
Hpy188III	TCNNGA	2 cut(s)	182, 236
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	38, 84, 194, 245
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	88, 185, 298, 393
KpnI	GGTACC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	85, 136, 271, 298, 303, 323, 330, 342
Lsp1109I	GCAGC	2 cut(s)	163, 319
LweI	GCATC	2 cut(s)	175, 351
MaeI	CTAG	1 cut(s)	236
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	133, 382
MluCI	AATT	2 cut(s)	40, 276
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	5 cut(s)	178, 190, 295, 343, 376
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	427
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	286, 318
MvaI	CCWGG	2 cut(s)	286, 318
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	88, 185, 298, 393
NlaIV	GGNNCC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	181
PasI	CCCWGGG	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	63, 203, 227, 400
PkrI	GCNGC	2 cut(s)	178, 334
Psp6I	CCWGG	2 cut(s)	284, 316
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	2 cut(s)	284, 316
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	2 cut(s)	177, 333
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	286, 318
SetI	ASST	7 cut(s)	101, 155, 201, 306, 315, 334, 387
SfaNI	GCATC	2 cut(s)	175, 351
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	2 cut(s)	40, 276
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	284, 316
StyI	CCWWGG	1 cut(s)	270
TasI	AATT	2 cut(s)	40, 276
TfiI	GAWTC	4 cut(s)	63, 203, 227, 400
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	2 cut(s)	176, 332
TspDTI	ATGAA	3 cut(s)	269, 378, 397
TspRI	CASTG	1 cut(s)	418
XapI	RAATTY	1 cut(s)	276
XbaI	TCTAGA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.