Rmu_sc0001993.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001993.1
OG0000643
Physical Location & Seq
Forward (+)
63666 .. 65385
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001993.1_g000020.1.cds

Sequence Viewer

Length: 567 bp
atggtggtagacattcccgtaggagtaggagttgaagccgcagtagaagcaggagtagaagtcagagcttgcaagccggcactgctcctcatgctgcaactactattgggggtttctaagaggccggtgaagaaggaagacaaggttcttggttcaattgagcccaagaagcttttcaaagaaggggagaagtctgtgcctaacaagaagccagtcaaggctgggagggttgtggcaagcaggtataatcagattggtaattcttcggctgctgctgcggatggccggaaaaggtctttgccggattatgatgtgaggcgtgtcgttggtggggaggccgcgtggaattgggagggagggggtgtggaggatggtgttactgaaatgggtgctgtgaatgatgtgctgccgaagattaggactgttcgatgtgttaatgacacgccgagggggtcagggacggcgaaaagggtggcggaattggttgagatgaacaactgttttagcaacagtgatgagttctgccaggaattgagttttgcagaagaggaagatggtgaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.21

Weight (kDa)

5.33

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 9
AccII CGCG 1 cut(s) 341
AciI CCGC 4 cut(s) 39, 278, 339, 476
AcoI YGGCCR 1 cut(s) 283
AgsI TTSAA 3 cut(s) 35, 156, 178
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 68, 172
AluI AGCT 2 cut(s) 68, 172
AoxI GGCC 3 cut(s) 122, 283, 336
ApeKI GCWGC 5 cut(s) 94, 269, 272, 275, 406
Asp700I GAANNNNTTC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 139
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 5 cut(s) 81, 256, 259, 262, 393
BccI CCATC 3 cut(s) 275, 365, 548
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 231
BisI GCNGC 7 cut(s) 39, 95, 270, 273, 276, 339, 407
BlsI GCNGC 7 cut(s) 40, 96, 271, 274, 277, 340, 408
Bme1390I CCNGG 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 446
BsaXI ACNNNNNCTCC 8 cut(s) 15, 45, 45, 75, 326, 348, 356, 378
Bse118I RCCGGY 2 cut(s) 76, 124
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 2 cut(s) 286, 376
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 5 cut(s) 81, 256, 259, 262, 393
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 124, 285, 338
BsiSI CCGG 4 cut(s) 77, 125, 286, 302
BslFI GGGAC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 3 cut(s) 124, 285, 338
Bsp1286I GDGCHC 1 cut(s) 165
BspACI CCGC 4 cut(s) 39, 278, 339, 476
BspANI GGCC 3 cut(s) 124, 285, 338
BspFNI CGCG 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 231
BsrFI RCCGGY 2 cut(s) 76, 124
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 2 cut(s) 76, 124
BssECI CCNNGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 424, 500, 512
Bst6I CTCTTC 1 cut(s) 540
BstC8I GCNNGC 4 cut(s) 70, 74, 78, 238
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 286, 376
BstFNI CGCG 1 cut(s) 341
BstMWI GCNNNNNNNGC 5 cut(s) 47, 82, 91, 169, 275
BstNI CCWGG 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 525
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 5 cut(s) 81, 256, 259, 262, 393
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 3 cut(s) 124, 285, 338
BtsCI GGATG 2 cut(s) 286, 376
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 2 cut(s) 80, 517
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 4 cut(s) 70, 74, 78, 238
Cfr10I RCCGGY 2 cut(s) 76, 124
CviAII CATG 1 cut(s) 91
DdeI CTNAG 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 525
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 246, 309
FaqI GGGAC 1 cut(s) 472
FatI CATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 7 cut(s) 39, 95, 270, 273, 276, 339, 407
FokI GGATG 2 cut(s) 293, 383
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 7 cut(s) 39, 95, 270, 273, 276, 339, 407
GluI GCNGC 7 cut(s) 39, 95, 270, 273, 276, 339, 407
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 3 cut(s) 124, 285, 338
HapII CCGG 4 cut(s) 77, 125, 286, 302
Hin1II CATG 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 170
HpaII CCGG 4 cut(s) 77, 125, 286, 302
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 65, 252
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 127, 176
HpyCH4III ACNGT 3 cut(s) 424, 500, 512
HpyCH4V TGCA 3 cut(s) 72, 97, 542
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 82, 91, 169, 275
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 94
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 90
Lsp1109I GCAGC 5 cut(s) 81, 256, 259, 262, 393
MaeIII GTNAC 1 cut(s) 376
MboII GAAGA 6 cut(s) 142, 149, 255, 424, 557, 563
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 156, 259, 346, 479, 530
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 435
MspI CCGG 4 cut(s) 77, 125, 286, 302
MspR9I CCNGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 5 cut(s) 47, 82, 91, 169, 275
NaeI GCCGGC 1 cut(s) 78
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 471
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 173
PkrI GCNGC 7 cut(s) 40, 96, 271, 274, 277, 340, 408
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 525
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 7 cut(s) 39, 95, 270, 273, 276, 339, 407
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 165
SetI ASST 5 cut(s) 70, 147, 174, 245, 296
Sse9I AATT 5 cut(s) 156, 259, 346, 479, 530
SsiI CCGC 4 cut(s) 39, 278, 339, 476
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 424, 500, 512
TaqI TCGA 1 cut(s) 427
TasI AATT 5 cut(s) 156, 259, 346, 479, 530
TauI GCSGC 2 cut(s) 41, 341
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 2 cut(s) 87, 517
TseI GCWGC 5 cut(s) 94, 269, 272, 275, 406
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 2 cut(s) 87, 517
XmiI GTMKAC 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.