Rorug05G0303900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000643
Physical Location & Seq
Forward (+)
35388237 .. 35391094
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0303900.1

Sequence Viewer

Length: 855 bp
ATGACAATTTTAATTTATTCCGATCCCAACAATGTTTATAATGGAGAAATGTCAGTATCATTTTGCAACTTGAGTTCTCTACTTATTCTTGATTTGTCCAACAACAACTTGAGTGGCCTGATTCCACAATGCTTGGGTAACTCCGATGCTTTGGAGATGTTGAACCTACGGAATAACTCATTTGAGGGCCAAAATCCTCCAATATGTACCGACGGAATTAGTTTTAAATCGGTTGACTTAAGTATAAATATGTTGCAGGGGAAACTACCAACATCTAATGCGAATTGTACTCGGCTAGAGTTTCTTAATTTGGCAAACAATCAGATTAGTGACATCTTACCAGCTCAGTTATGGGCTCTTCCAGTTTTGAGGGTTCTCAGTTTGCGGTCTAATAGATTTCATGGCACAATTGGCATGGCTGCAACAAACCTCGAGTCCTCAAAGTTGTGCATCATTGACTTATCTAACAATTCTTTTTCTGGAATGTTGCCGTCTAACTTCATAGAGAACTGGAATTGCCTCAAATCTGTTAGTATTTATGAAGAAGGCTCGACAGTATTCCAAGATACTTGCAGTATTGGTGCTGTAACGTATCCTTATGATTACTCCGTGTCACTCTCCGGGATAGGTGTTCAGCTGAAACCTTTGAAGTACGCTAACTTTCAGAATCCTTTTCACTACAAAGTCATAGATCTCTCAAGTAACAAGTTTGAAGGAGAGATTCCAGGTGCCATTGGGAATCTAGTAGGGCTTCAAATTCTTAGCCTTTCCAACAACAATTTCTCGGGTAACATTCTGTCATCTTTACGGATCCAGAGTTTCCAGCAGGATCCAGAGCAACAAGCTTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.14

Weight (kDa)

4.69

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 20 - 60 1.1e-06 Leucine rich repeat
LRR_8 PF13855 76 - 133 1.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 728
AciI CCGC 1 cut(s) 385
AclWI GGATC 5 cut(s) 17, 805, 818, 824, 837
AcsI RAATTY 1 cut(s) 756
AfaI GTAC 3 cut(s) 208, 289, 653
AflII CTTAAG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 163, 649, 713, 755
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 3 cut(s) 344, 637, 845
AluI AGCT 3 cut(s) 344, 637, 845
AlwI GGATC 5 cut(s) 17, 805, 818, 824, 837
Ama87I CYCGRG 2 cut(s) 431, 784
AoxI GGCC 2 cut(s) 115, 187
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 756
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 1 cut(s) 841
AvaI CYCGRG 2 cut(s) 431, 784
BamHI GGATCC 2 cut(s) 810, 829
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 603
BcnI CCSGG 1 cut(s) 622
BfaI CTAG 2 cut(s) 296, 743
BfrI CTTAAG 1 cut(s) 238
BfuI GTATCC 1 cut(s) 603
BglII AGATCT 1 cut(s) 691
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 2 cut(s) 622, 726
BmeT110I CYCGRG 2 cut(s) 431, 784
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 730, 812, 831
BmrFI CCNGG 2 cut(s) 622, 726
BmsI GCATC 2 cut(s) 136, 459
BpuEI CTTGAG 3 cut(s) 91, 130, 682
BpuMI CCSGG 1 cut(s) 622
Bse1I ACTGG 2 cut(s) 362, 515
BseBI CCWGG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 359, 391
BseNI ACTGG 2 cut(s) 362, 515
BseXI GCAGC 1 cut(s) 406
BshFI GGCC 2 cut(s) 117, 189
BshNI GGYRCC 1 cut(s) 728
BsiHKCI CYCGRG 2 cut(s) 431, 784
BsiSI CCGG 1 cut(s) 621
BsnI GGCC 2 cut(s) 117, 189
BsoBI CYCGRG 2 cut(s) 431, 784
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 4 cut(s) 22, 691, 810, 829
BspACI CCGC 1 cut(s) 385
BspANI GGCC 2 cut(s) 117, 189
BspCNI CTCAG 2 cut(s) 358, 390
BspLI GGNNCC 3 cut(s) 730, 812, 831
BspPI GGATC 5 cut(s) 17, 805, 818, 824, 837
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 728
BspTI CTTAAG 1 cut(s) 238
BsrI ACTGG 2 cut(s) 362, 515
BssMI GATC 4 cut(s) 22, 691, 810, 829
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 345, 377, 761
BstKTI GATC 4 cut(s) 25, 694, 813, 832
BstMBI GATC 4 cut(s) 22, 691, 810, 829
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 1 cut(s) 726
BstSCI CCNGG 2 cut(s) 620, 724
BstV1I GCAGC 1 cut(s) 406
BstX2I RGATCY 3 cut(s) 691, 810, 829
BstYI RGATCY 3 cut(s) 691, 810, 829
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 2 cut(s) 117, 189
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 207, 288, 652
CspCI CAANNNNNGTGG 4 cut(s) 94, 114, 129, 149
CviAII CATG 2 cut(s) 401, 415
CviQI GTAC 3 cut(s) 207, 288, 652
DdeI CTNAG 3 cut(s) 345, 377, 761
DpnI GATC 4 cut(s) 24, 693, 812, 831
DpnII GATC 4 cut(s) 22, 691, 810, 829
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 358
Eco88I CYCGRG 2 cut(s) 431, 784
EcoRII CCWGG 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 358
FaeI CATG 2 cut(s) 404, 418
FatI CATG 2 cut(s) 400, 414
Fnu4HI GCNGC 1 cut(s) 420
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 2 cut(s) 296, 743
GluI GCNGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 117, 189
HapII CCGG 1 cut(s) 621
Hin1II CATG 2 cut(s) 404, 418
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 5 cut(s) 121, 434, 667, 721, 739
HpaII CCGG 1 cut(s) 621
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 22, 145, 324, 666
Hpy188III TCNNGA 4 cut(s) 89, 480, 814, 833
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 539, 707
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 5 cut(s) 66, 256, 422, 450, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 3 cut(s) 345, 377, 761
HpySE526I ACGT 1 cut(s) 590
Hsp92II CATG 2 cut(s) 404, 418
Kzo9I GATC 4 cut(s) 22, 691, 810, 829
LguI GCTCTTC 1 cut(s) 363
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 2 cut(s) 136, 459
MaeI CTAG 2 cut(s) 296, 743
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 6 cut(s) 137, 329, 586, 612, 701, 788
MalI GATC 4 cut(s) 24, 693, 812, 831
MboI GATC 4 cut(s) 22, 691, 810, 829
MboII GAAGA 2 cut(s) 350, 554
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 3 cut(s) 691, 810, 829
MhlI GDGCHC 1 cut(s) 358
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 123, 795
MnlI CCTC 6 cut(s) 178, 207, 363, 440, 448, 530
MseI TTAA 4 cut(s) 11, 225, 239, 306
MspA1I CMGCKG 1 cut(s) 637
MspCI CTTAAG 1 cut(s) 238
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 2 cut(s) 622, 726
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 622
NdeII GATC 4 cut(s) 22, 691, 810, 829
NlaIII CATG 2 cut(s) 404, 418
NlaIV GGNNCC 3 cut(s) 730, 812, 831
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 329, 612
PaeR7I CTCGAG 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 4 cut(s) 121, 667, 721, 739
PfoI TCCNGGA 1 cut(s) 620
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PsiI TTATAA 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 3 cut(s) 730, 812, 831
PspPI GGNCC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 431
PsuI RGATCY 3 cut(s) 691, 810, 829
PvuII CAGCTG 1 cut(s) 637
RsaI GTAC 3 cut(s) 208, 289, 653
RsaNI GTAC 3 cut(s) 207, 288, 652
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 4 cut(s) 11, 225, 239, 306
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 4 cut(s) 22, 691, 810, 829
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 622, 726
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 2 cut(s) 136, 459
Sfr274I CTCGAG 1 cut(s) 431
SlaI CTCGAG 1 cut(s) 431
SmlI CTYRAG 5 cut(s) 70, 109, 238, 431, 697
SmoI CTYRAG 5 cut(s) 70, 109, 238, 431, 697
SsiI CCGC 1 cut(s) 385
SspMI CTAG 2 cut(s) 296, 743
StyD4I CCNGG 2 cut(s) 620, 724
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 1 cut(s) 593
TaqI TCGA 2 cut(s) 432, 551
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 4 cut(s) 121, 667, 721, 739
Tru1I TTAA 4 cut(s) 11, 225, 239, 306
Tru9I TTAA 4 cut(s) 11, 225, 239, 306
TseFI GTSAC 2 cut(s) 329, 612
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 2 cut(s) 329, 612
TspDTI ATGAA 3 cut(s) 389, 490, 555
TspGWI ACGGA 4 cut(s) 184, 228, 598, 823
Vha464I CTTAAG 1 cut(s) 238
XapI RAATTY 1 cut(s) 756
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 431
XspI CTAG 2 cut(s) 296, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.