RLG00000007135

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000643
Physical Location & Seq
Reverse (-)
13844865 .. 13845305
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007135

Sequence Viewer

Length: 387 bp
ATGCCGTTTAAGCCACTGAACCGAAATTCGCAGTGGCTATCGGTGGCGCCGAAGAAGTTGGGGTTTGAGGTTGAAAAAGAGAAAGGTCGAGACTTGGGGAAGATTGATTCAGAGATTGAGGAAATCGAGAAGGAGATAAGCCGATTGAGTTCGAGGCTAGAATTGCAGAAACTAGAGAAGACCCAGAAGCGGAGTGTGAAGAATTCCAATGGGTTGAGAAAGATTGAGGAGTCTTTGAATTTGAGCGCTAGGCCGAAGGTTAATCGAAGAGGTATGAGTTTGGGGCCGTCAGAGATTATCACCAGTGTCGAGTTCCGGCGACCAAACAAGCTTGAGATAACCCCTCTGTTCAGAAAATACAGGATCGCCGGAAATCTTGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.73

Weight (kDa)

10.2

Isoelectric Point (pI)

70.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 371
AcsI RAATTY 3 cut(s) 25, 202, 238
AcyI GRCGYC 1 cut(s) 47
AfeI AGCGCT 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 2 cut(s) 74, 238
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 371
Aor51HI AGCGCT 1 cut(s) 247
AoxI GGCC 2 cut(s) 251, 284
ApoI RAATTY 3 cut(s) 25, 202, 238
AspLEI GCGC 2 cut(s) 49, 248
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 292
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 3 cut(s) 158, 173, 249
BfoI RGCGCY 2 cut(s) 50, 249
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 48, 285
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 242
BshFI GGCC 2 cut(s) 253, 286
BshNI GGYRCC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 316, 369
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 2 cut(s) 253, 286
Bsp143I GATC 1 cut(s) 363
BspACI CCGC 1 cut(s) 190
BspANI GGCC 2 cut(s) 253, 286
BspLI GGNNCC 2 cut(s) 48, 285
BspPI GGATC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 303
BssMI GATC 1 cut(s) 363
BssNI GRCGYC 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 47
BstH2I RGCGCY 2 cut(s) 50, 249
BstHHI GCGC 2 cut(s) 49, 248
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 10, 163
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 253, 286
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 14, 38, 310
CfoI GCGC 2 cut(s) 49, 248
Cfr13I GGNCC 1 cut(s) 284
CviJI RGCY 7 cut(s) 13, 37, 141, 157, 253, 286, 331
CviKI_1 RGCY 7 cut(s) 13, 37, 141, 157, 253, 286, 331
DinI GGCGCC 1 cut(s) 48
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco47III AGCGCT 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 202
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
FaiI YATR 1 cut(s) 275
FspBI CTAG 3 cut(s) 158, 173, 249
GlaI GCGC 2 cut(s) 48, 247
HaeII RGCGCY 2 cut(s) 50, 249
HaeIII GGCC 2 cut(s) 253, 286
HapII CCGG 2 cut(s) 316, 369
HhaI GCGC 2 cut(s) 49, 248
Hin1I GRCGYC 1 cut(s) 47
Hin6I GCGC 2 cut(s) 47, 246
HinP1I GCGC 2 cut(s) 47, 246
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 107, 230
HpaII CCGG 2 cut(s) 316, 369
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 112, 292, 353
Hpy188III TCNNGA 3 cut(s) 89, 127, 384
HpyAV CCTTC 2 cut(s) 124, 250
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 163
Hsp92I GRCGYC 1 cut(s) 47
HspAI GCGC 2 cut(s) 47, 246
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 363
LpnPI CCDG 5 cut(s) 197, 316, 329, 346, 382
MaeI CTAG 3 cut(s) 158, 173, 249
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 5 cut(s) 64, 112, 190, 211, 279
MluCI AATT 4 cut(s) 25, 161, 202, 238
Mly113I GGCGCC 1 cut(s) 47
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 6 cut(s) 61, 112, 147, 220, 263, 354
MseI TTAA 2 cut(s) 9, 261
MspI CCGG 2 cut(s) 316, 369
MwoI GCNNNNNNNGC 2 cut(s) 10, 163
NarI GGCGCC 1 cut(s) 47
NdeII GATC 1 cut(s) 363
NlaIV GGNNCC 2 cut(s) 48, 285
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 238
PluTI GGCGCC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 48, 285
PspPI GGNCC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 9, 261
Sau3AI GATC 1 cut(s) 363
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 239
SetI ASST 5 cut(s) 72, 88, 261, 274, 333
SfoI GGCGCC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 4 cut(s) 25, 161, 202, 238
SsiI CCGC 1 cut(s) 190
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 3 cut(s) 158, 173, 249
TaqI TCGA 5 cut(s) 88, 126, 152, 265, 309
TasI AATT 4 cut(s) 25, 161, 202, 238
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 9, 261
Tru9I TTAA 2 cut(s) 9, 261
TscAI CASTG 3 cut(s) 21, 38, 310
TspRI CASTG 3 cut(s) 21, 38, 310
XapI RAATTY 3 cut(s) 25, 202, 238
XspI CTAG 3 cut(s) 158, 173, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.