Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001403.1

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

143968 .. 145860

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001403.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgccgccagcctcattaggctggacaggaggatctttgttgccctcagtagcgggctgtggagtttcactctgctctgttgacatgtttggtgacgttgggttgagtgagaacttctgtattacctgcgtgccagcaccgtggggtgcagtcgtcagggggtcccttgacctgacttcttctagagcgctgtggatggggagagcaccaacctcatcacagggttcttttcttgccttttggaaaaaggactttttgccttacggcaaagagaatttgagccctgttctgaaaacttctcttttcacggtgtctatgatgctgtttaagctgctgaacgaaaattcgcggcagctattggtggcgccgaagaagatggggtttgaggttgaagaagagaaaggtctagacctagggaagatctattcggagattgaggaaattgagaaagagataagccgattgaattcgaggctggaattgcggaaactagtgaaggcccagaaagtggtagagaagcttgacagagttgtggcggcgaatttcatggagccttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.42

Weight (kDa)

7.6

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccII	CGCG	1 cut(s)	349
AciI	CCGC	5 cut(s)	5, 53, 349, 484, 536
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	4 cut(s)	274, 343, 466, 541
AcyI	GRCGYC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	392, 466
AhlI	ACTAGT	1 cut(s)	490
AluBI	AGCT	3 cut(s)	331, 355, 520
AluI	AGCT	3 cut(s)	331, 355, 520
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	189
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	331, 352
ApoI	RAATTY	4 cut(s)	274, 343, 466, 541
AspA2I	CCTAGG	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	190, 367
AspS9I	GGNCC	2 cut(s)	162, 499
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	162
AvrII	CCTAGG	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	318, 364
BccI	CCATC	2 cut(s)	190, 370
BceAI	ACGGC	1 cut(s)	280
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	4 cut(s)	183, 407, 413, 491
BfoI	RGCGCY	2 cut(s)	191, 368
BfuAI	ACCTGC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	5 cut(s)	5, 332, 350, 353, 537
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	5 cut(s)	6, 333, 351, 354, 538
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	162, 499
BmiI	GGNNCC	4 cut(s)	163, 164, 366, 552
BmsI	GCATC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	140, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	140, 412
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	318, 364
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	208, 284
Bsp143I	GATC	2 cut(s)	32, 420
BspACI	CCGC	5 cut(s)	5, 53, 349, 484, 536
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	163, 164, 366, 552
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	140, 412
BssMI	GATC	2 cut(s)	32, 420
BssNI	GRCGYC	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	141, 310
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	365
BstC8I	GCNNGC	4 cut(s)	9, 55, 131, 135
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	349
BstH2I	RGCGCY	2 cut(s)	191, 368
BstHHI	GCGC	2 cut(s)	190, 367
BstKTI	GATC	2 cut(s)	35, 423
BstMBI	GATC	2 cut(s)	32, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 481
BstNSI	RCATGY	1 cut(s)	88
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	318, 364
BstX2I	RGATCY	2 cut(s)	32, 420
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	2 cut(s)	32, 420
BsuRI	GGCC	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	9, 55, 131, 135
CfoI	GCGC	2 cut(s)	190, 367
Cfr13I	GGNCC	2 cut(s)	162, 499
CviAII	CATG	2 cut(s)	85, 547
DdeI	CTNAG	1 cut(s)	46
DinI	GGCGCC	1 cut(s)	366
DpnI	GATC	2 cut(s)	34, 422
DpnII	GATC	2 cut(s)	32, 420
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	366
EheI	GGCGCC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	88, 550
FaiI	YATR	4 cut(s)	86, 317, 548, 559
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	84, 546
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	5, 332, 350, 353, 537
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	5 cut(s)	5, 332, 350, 353, 537
FspBI	CTAG	4 cut(s)	183, 407, 413, 491
GlaI	GCGC	2 cut(s)	189, 366
GluI	GCNGC	5 cut(s)	5, 332, 350, 353, 537
HaeII	RGCGCY	2 cut(s)	191, 368
HaeIII	GGCC	1 cut(s)	500
HhaI	GCGC	2 cut(s)	190, 367
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	2 cut(s)	88, 550
Hin6I	GCGC	2 cut(s)	188, 365
HinP1I	GCGC	2 cut(s)	188, 365
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	518
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	291, 430
Hpy188III	TCNNGA	2 cut(s)	183, 407
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	2 cut(s)	141, 310
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 481
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	88, 550
HspAI	GCGC	2 cut(s)	188, 365
KasI	GGCGCC	1 cut(s)	364
KflI	GGGWCCC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	32, 420
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	2 cut(s)	318, 364
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	4 cut(s)	183, 407, 413, 491
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	34, 422
MboI	GATC	2 cut(s)	32, 420
MboII	GAAGA	6 cut(s)	171, 382, 385, 404, 407, 430
MflI	RGATCY	2 cut(s)	32, 420
MhlI	GDGCHC	2 cut(s)	208, 284
MluCI	AATT	6 cut(s)	274, 343, 441, 466, 479, 541
Mly113I	GGCGCC	1 cut(s)	365
MnlI	CCTC	7 cut(s)	22, 23, 55, 223, 379, 430, 465
MseI	TTAA	1 cut(s)	327
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	328, 481
NarI	GGCGCC	1 cut(s)	365
NdeII	GATC	2 cut(s)	32, 420
NlaIII	CATG	2 cut(s)	88, 550
NlaIV	GGNNCC	4 cut(s)	163, 164, 366, 552
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	5 cut(s)	6, 333, 351, 354, 538
PluTI	GGCGCC	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	162
PscI	ACATGT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	4 cut(s)	163, 164, 366, 552
PspPI	GGNCC	2 cut(s)	162, 499
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	32, 420
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	5 cut(s)	5, 332, 350, 353, 537
Sau3AI	GATC	2 cut(s)	32, 420
Sau96I	GGNCC	2 cut(s)	162, 499
SduI	GDGCHC	2 cut(s)	208, 284
SfaNI	GCATC	1 cut(s)	309
SfoI	GGCGCC	1 cut(s)	366
SinI	GGWCC	1 cut(s)	162
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	6 cut(s)	274, 343, 441, 466, 479, 541
SsiI	CCGC	5 cut(s)	5, 53, 349, 484, 536
SspDI	GGCGCC	1 cut(s)	364
SspMI	CTAG	4 cut(s)	183, 407, 413, 491
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	141, 310
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	470
TasI	AATT	6 cut(s)	274, 343, 441, 466, 479, 541
TauI	GCSGC	3 cut(s)	7, 352, 539
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	331, 352
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	535, 546
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	4 cut(s)	274, 343, 466, 541
XbaI	TCTAGA	2 cut(s)	182, 406
XceI	RCATGY	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	4 cut(s)	183, 407, 413, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.