Rw2G046170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000643
Physical Location & Seq
Forward (+)
73493530 .. 73495441
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046170.1

Sequence Viewer

Length: 1323 bp
ATGAGTGTTCTTGAATACCCAGACGCCATTAACGCCCCGGAGCTTCAGGTCTGGAACAACGCCGCCTTCGACGACAATGAGGGCTCTGAGTTCTCCTGCGCCACCGTTAAAGCTTCCTGGTCTTCCGAATCCGATTGCAGCAAAGAGAATCTGAGCCCGGTTCCGAAAACCCCTGTTTTCGCGGCGTCTTCGGTGCCGTTTAAGCCGCTGAACGGAAATTCGCGGCGGTTGTCTGTGGCGCCGAAGAAGATGGGGTTTGAGGTTGAAGAAGAGAAAGGTCGAGACTTGGGGAAGATCGATTCGGAGATTGAGGAAATCGAGAAGGAGATAGGCCGTTTGAATTCGAGGCTGGAGTTGCTGAAACTCGAGAAGGCCCAGAAGGCTGCGGAGAAGCGCGGCAGGGTTGTGGCGGCGAAGTTCATGGAGCCGCCGAAGCAGAGTGTGAAGAATTCCGATGGGTTGAGAAAGATTGAGGAGTCTTTGAATTTGAGCGCCAGGCCGAAGGTTAATCGGAGAGGTATGAGTTTGGGGCCGTCGGAGATTATCGCCGGAGCCGGGTTCCGGCGGCCGAGTAAGCTTGAGATAACCCCTGTTCAGAAAATACAGGACCGCAGGAAATCTTGCTTCTGGAAGCTTCAGGACATTGATGAACTGAGGGTTACTAAAGAGAGGGGTAAAAGCACGAGTCTTAGCCCGAAATCGAGGAAGACTGCGTCGAAAATCGGAGCTCCGAAACAGGCTGCAACTTCAATCGGGGGTTCTAAGAGGCCGGTGAAGAAGGAAGACAAGGTTATTGGTTCAATTGAGCCCAAGAAGCTTTTCAAAGAAGGGGAGAAGTCTGTGCCTACCAAGAAGCCAGTCAAGGCTGGGAGGGTTGTGGCAAGCAGGTACAATCAGATTGGTACTTCTTCGGCTGCTGCGGCGGATGGCCGGAAAAGGTCTTTGCCGGATGATGATAAGGAAGATGGGAGCCGGTGTGAGAAGAAGCGCGTGTCATTGGTGGGGAAGCCACGTGGCATTGGGAGGGAGGGGTCTAGGAGCGTTGGACCGGAGAGTAGGATGAAGAAGAGGTGGGAGATTCCTAGTGAGGTCGTGGTGTTCCAGGGTGTGGAGGAGGATGGTGTTGCTGAAATGGGTGCTGTGAATGATGGTTTAGGGCTGCCGAAGATTAGGACTGTTCGATGTGTTAACGACACGCCAAGGGGGTCAGGGCCGGCAAAAAGGGTGGCGGAATTAGTTGGGATGAAGAAGTATTTTAGCAACAGTGATGAGTTCTGCCAGGAATTGAGTTTTGCGGAAGAGGAGGATGGTGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

48.33

Weight (kDa)

9.4

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 876
AccB1I GGYRCC 2 cut(s) 193, 238
AccB7I CCANNNNNTGG 1 cut(s) 1108
AccII CGCG 4 cut(s) 182, 223, 396, 990
AcoI YGGCCR 2 cut(s) 566, 928
AcsI RAATTY 4 cut(s) 217, 340, 448, 484
AcuI CTGAAG 2 cut(s) 29, 620
AcvI CACGTG 1 cut(s) 1013
AcyI GRCGYC 3 cut(s) 24, 185, 239
AfaI GTAC 2 cut(s) 890, 904
AfiI CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
AgsI TTSAA 7 cut(s) 14, 266, 340, 484, 750, 801, 823
AjnI CCWGG 4 cut(s) 116, 494, 1101, 1278
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AluBI AGCT 6 cut(s) 43, 113, 577, 634, 728, 817
AluI AGCT 6 cut(s) 43, 113, 577, 634, 728, 817
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 8 cut(s) 331, 372, 497, 530, 566, 767, 928, 1211
ApeKI GCWGC 6 cut(s) 138, 383, 740, 914, 917, 1159
ApoI RAATTY 4 cut(s) 217, 340, 448, 484
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 5 cut(s) 101, 241, 396, 494, 990
AspS9I GGNCC 5 cut(s) 373, 530, 607, 1046, 1211
AsuC2I CCSGG 3 cut(s) 38, 158, 556
AsuHPI GGTGA 2 cut(s) 784, 1322
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 2 cut(s) 607, 1046
BanI GGYRCC 2 cut(s) 193, 238
BanII GRGCYC 4 cut(s) 86, 158, 730, 810
BauI CACGAG 1 cut(s) 682
BbrPI CACGTG 1 cut(s) 1013
BbsI GAAGAC 4 cut(s) 114, 180, 713, 789
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 6 cut(s) 150, 370, 727, 901, 904, 1146
BccI CCATC 7 cut(s) 244, 449, 920, 959, 1112, 1142, 1301
BceAI ACGGC 3 cut(s) 181, 318, 517
BciT130I CCWGG 4 cut(s) 118, 496, 1103, 1280
BcnI CCSGG 3 cut(s) 38, 158, 556
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 2 cut(s) 1035, 1083
BfoI RGCGCY 2 cut(s) 242, 495
BfuAI ACCTGC 1 cut(s) 876
BglI GCCNNNNNGGC 1 cut(s) 380
Bme1390I CCNGG 7 cut(s) 38, 118, 158, 496, 556, 1103, 1280
Bme18I GGWCC 2 cut(s) 607, 1046
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 5 cut(s) 373, 530, 607, 1046, 1211
BmiI GGNNCC 8 cut(s) 162, 195, 240, 426, 531, 553, 560, 971
BmrFI CCNGG 7 cut(s) 38, 118, 158, 496, 556, 1103, 1280
BpiI GAAGAC 4 cut(s) 114, 180, 713, 789
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 3 cut(s) 38, 158, 556
Bsa29I ATCGAT 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 1013
BsaHI GRCGYC 3 cut(s) 24, 185, 239
BsaJI CCNNGG 3 cut(s) 36, 1102, 1199
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
Bse118I RCCGGY 3 cut(s) 769, 972, 1213
Bse1I ACTGG 1 cut(s) 857
BseBI CCWGG 4 cut(s) 118, 496, 1103, 1280
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 36, 1102, 1199
BseGI GGATG 6 cut(s) 931, 955, 1065, 1123, 1248, 1312
BseLI CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
BseMII CTCAG 3 cut(s) 78, 143, 644
BseNI ACTGG 1 cut(s) 857
BseRI GAGGAG 3 cut(s) 488, 1127, 1316
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 6 cut(s) 150, 370, 727, 901, 904, 1146
BseYI CCCAGC 1 cut(s) 866
Bsh1236I CGCG 4 cut(s) 182, 223, 396, 990
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1213
BshNI GGYRCC 2 cut(s) 193, 238
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 365
BslI CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
BsmAI GTCTC 1 cut(s) 276
BsnI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1213
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 86, 158, 730, 810
Bsp143I GATC 1 cut(s) 294
BspANI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1213
BspCNI CTCAG 3 cut(s) 79, 144, 645
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 4 cut(s) 182, 223, 396, 990
BspLI GGNNCC 8 cut(s) 162, 195, 240, 426, 531, 553, 560, 971
BspMI ACCTGC 1 cut(s) 876
BspT107I GGYRCC 2 cut(s) 193, 238
BsrFI RCCGGY 3 cut(s) 769, 972, 1213
BsrI ACTGG 1 cut(s) 857
BssAI RCCGGY 3 cut(s) 769, 972, 1213
BssECI CCNNGG 3 cut(s) 36, 1102, 1199
BssMI GATC 1 cut(s) 294
BssNI GRCGYC 3 cut(s) 24, 185, 239
BssSI CACGAG 1 cut(s) 682
BssT1I CCWWGG 1 cut(s) 1199
Bst2BI CACGAG 1 cut(s) 682
Bst2UI CCWGG 4 cut(s) 118, 496, 1103, 1280
Bst4CI ACNGT 3 cut(s) 106, 1177, 1265
Bst6I CTCTTC 3 cut(s) 264, 1061, 1293
BstACI GRCGYC 3 cut(s) 24, 185, 239
BstBAI YACGTR 1 cut(s) 1013
BstC8I GCNNGC 2 cut(s) 883, 1215
BstDEI CTNAG 5 cut(s) 87, 152, 653, 689, 762
BstF5I GGATG 6 cut(s) 931, 955, 1065, 1123, 1248, 1312
BstFNI CGCG 4 cut(s) 182, 223, 396, 990
BstH2I RGCGCY 2 cut(s) 242, 495
BstHHI GCGC 5 cut(s) 101, 241, 396, 494, 990
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 1 cut(s) 294
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 8 cut(s) 32, 202, 355, 380, 433, 574, 814, 920
BstNI CCWGG 4 cut(s) 118, 496, 1103, 1280
BstSCI CCNGG 7 cut(s) 36, 116, 156, 494, 554, 1101, 1278
BstUI CGCG 4 cut(s) 182, 223, 396, 990
BstV1I GCAGC 6 cut(s) 150, 370, 727, 901, 904, 1146
BstV2I GAAGAC 4 cut(s) 114, 180, 713, 789
BstZI CGGCCG 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1213
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 6 cut(s) 931, 955, 1065, 1123, 1248, 1312
BtsIMutI CAGTG 1 cut(s) 1270
BveI ACCTGC 1 cut(s) 876
Cac8I GCNNGC 2 cut(s) 883, 1215
CfoI GCGC 5 cut(s) 101, 241, 396, 494, 990
Cfr10I RCCGGY 3 cut(s) 769, 972, 1213
Cfr13I GGNCC 5 cut(s) 373, 530, 607, 1046, 1211
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 3 cut(s) 32, 174, 702
Csp6I GTAC 2 cut(s) 889, 903
CspCI CAANNNNNGTGG 2 cut(s) 1206, 1241
CviAII CATG 1 cut(s) 421
CviQI GTAC 2 cut(s) 889, 903
DdeI CTNAG 5 cut(s) 87, 152, 653, 689, 762
DinI GGCGCC 1 cut(s) 240
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 566, 928
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 3 cut(s) 264, 1061, 1293
EarI CTCTTC 3 cut(s) 264, 1061, 1293
EciI GGCGGA 2 cut(s) 938, 1244
Ecl136II GAGCTC 1 cut(s) 728
EclXI CGGCCG 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 1199
Eco24I GRGCYC 4 cut(s) 86, 158, 730, 810
Eco47I GGWCC 2 cut(s) 607, 1046
Eco52I CGGCCG 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 2 cut(s) 29, 620
Eco72I CACGTG 1 cut(s) 1013
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 728
EcoRI GAATTC 2 cut(s) 340, 448
EcoRII CCWGG 4 cut(s) 116, 494, 1101, 1278
EcoT14I CCWWGG 1 cut(s) 1199
EcoT38I GRGCYC 4 cut(s) 86, 158, 730, 810
EgeI GGCGCC 1 cut(s) 240
EheI GGCGCC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 1199
FaeI CATG 1 cut(s) 424
FaiI YATR 2 cut(s) 422, 521
FatI CATG 1 cut(s) 420
FokI GGATG 6 cut(s) 938, 962, 1072, 1130, 1255, 1319
FriOI GRGCYC 4 cut(s) 86, 158, 730, 810
FspBI CTAG 2 cut(s) 1035, 1083
GlaI GCGC 5 cut(s) 100, 240, 395, 493, 989
GsaI CCCAGC 1 cut(s) 870
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 2 cut(s) 242, 495
HaeIII GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1213
HgaI GACGC 3 cut(s) 32, 174, 702
HhaI GCGC 5 cut(s) 101, 241, 396, 494, 990
Hin1I GRCGYC 3 cut(s) 24, 185, 239
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 5 cut(s) 99, 239, 394, 492, 988
HinP1I GCGC 5 cut(s) 99, 239, 394, 492, 988
HincII GTYRAC 1 cut(s) 1189
HindII GTYRAC 1 cut(s) 1189
HindIII AAGCTT 4 cut(s) 111, 575, 632, 815
HinfI GANTC 6 cut(s) 128, 148, 299, 476, 685, 1078
HpaI GTTAAC 1 cut(s) 1189
HphI GGTGA 2 cut(s) 784, 1322
Hpy166II GTNNAC 1 cut(s) 1189
Hpy188III TCNNGA 7 cut(s) 11, 52, 281, 319, 367, 628, 638
Hpy8I GTNNAC 1 cut(s) 1189
Hpy99I CGWCG 3 cut(s) 74, 538, 718
HpyAV CCTTC 7 cut(s) 76, 316, 364, 373, 496, 772, 821
HpyCH4III ACNGT 3 cut(s) 106, 1177, 1265
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 2 cut(s) 138, 743
HpyF10VI GCNNNNNNNGC 8 cut(s) 32, 202, 355, 380, 433, 574, 814, 920
HpyF3I CTNAG 5 cut(s) 87, 152, 653, 689, 762
HpySE526I ACGT 1 cut(s) 1012
Hsp92I GRCGYC 3 cut(s) 24, 185, 239
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 5 cut(s) 99, 239, 394, 492, 988
KasI GGCGCC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 1213
KroNI GCCGGC 1 cut(s) 1215
KspAI GTTAAC 1 cut(s) 1189
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 7 cut(s) 40, 424, 551, 725, 733, 969, 1038
Lsp1109I GCAGC 6 cut(s) 150, 370, 727, 901, 904, 1146
MaeI CTAG 2 cut(s) 1035, 1083
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 1 cut(s) 658
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MfeI CAATTG 1 cut(s) 801
MhlI GDGCHC 4 cut(s) 86, 158, 730, 810
MluCI AATT 7 cut(s) 217, 340, 448, 484, 801, 1232, 1283
Mly113I GGCGCC 1 cut(s) 239
MlyI GAGTC 2 cut(s) 485, 694
MmeI TCCRAC 2 cut(s) 516, 1024
MroNI GCCGGC 1 cut(s) 1213
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 5 cut(s) 30, 108, 201, 507, 1188
MspA1I CMGCKG 1 cut(s) 208
MspR9I CCNGG 7 cut(s) 38, 118, 158, 496, 556, 1103, 1280
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 4 cut(s) 118, 496, 1103, 1280
MvnI CGCG 4 cut(s) 182, 223, 396, 990
MwoI GCNNNNNNNGC 8 cut(s) 32, 202, 355, 380, 433, 574, 814, 920
NaeI GCCGGC 1 cut(s) 1215
NarI GGCGCC 1 cut(s) 239
NciI CCSGG 3 cut(s) 38, 158, 556
NdeII GATC 1 cut(s) 294
NgoMIV GCCGGC 1 cut(s) 1213
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 8 cut(s) 162, 195, 240, 426, 531, 553, 560, 971
NmeAIII GCCGAG 1 cut(s) 594
PaeR7I CTCGAG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 1215
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 4 cut(s) 128, 148, 299, 1078
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 1108
PleI GAGTC 2 cut(s) 484, 693
PluTI GGCGCC 1 cut(s) 242
PmaCI CACGTG 1 cut(s) 1013
PmlI CACGTG 1 cut(s) 1013
PpsI GAGTC 2 cut(s) 484, 693
Ppu21I YACGTR 1 cut(s) 1013
Psp124BI GAGCTC 1 cut(s) 730
Psp6I CCWGG 4 cut(s) 116, 494, 1101, 1278
PspCI CACGTG 1 cut(s) 1013
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 4 cut(s) 116, 494, 1101, 1278
PspN4I GGNNCC 8 cut(s) 162, 195, 240, 426, 531, 553, 560, 971
PspPI GGNCC 5 cut(s) 373, 530, 607, 1046, 1211
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 2 cut(s) 890, 904
RsaNI GTAC 2 cut(s) 889, 903
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 5 cut(s) 30, 108, 201, 507, 1188
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 5 cut(s) 373, 530, 607, 1046, 1211
SchI GAGTC 2 cut(s) 485, 694
ScrFI CCNGG 7 cut(s) 38, 118, 158, 496, 556, 1103, 1280
SduI GDGCHC 4 cut(s) 86, 158, 730, 810
SfoI GGCGCC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 607, 1046
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 365, 578
SmoI CTYRAG 2 cut(s) 365, 578
Sse9I AATT 7 cut(s) 217, 340, 448, 484, 801, 1232, 1283
SspDI GGCGCC 1 cut(s) 238
SspMI CTAG 2 cut(s) 1035, 1083
SstI GAGCTC 1 cut(s) 730
StyD4I CCNGG 7 cut(s) 36, 116, 156, 494, 554, 1101, 1278
StyI CCWWGG 1 cut(s) 1199
TaaI ACNGT 3 cut(s) 106, 1177, 1265
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 9 cut(s) 69, 280, 297, 318, 344, 366, 701, 716, 1180
TasI AATT 7 cut(s) 217, 340, 448, 484, 801, 1232, 1283
TauI GCSGC 9 cut(s) 65, 185, 208, 226, 399, 413, 430, 568, 923
TfiI GAWTC 4 cut(s) 128, 148, 299, 1078
Tru1I TTAA 5 cut(s) 30, 108, 201, 507, 1188
Tru9I TTAA 5 cut(s) 30, 108, 201, 507, 1188
TscAI CASTG 1 cut(s) 1270
TseI GCWGC 6 cut(s) 138, 383, 740, 914, 917, 1159
TspDTI ATGAA 4 cut(s) 409, 663, 1076, 1259
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 1270
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 1108
VpaK11BI GGWCC 2 cut(s) 607, 1046
XapI RAATTY 4 cut(s) 217, 340, 448, 484
XhoI CTCGAG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 2 cut(s) 1035, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.