Rmu_sc0003662.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003662.1
OG0000643
Physical Location & Seq
Reverse (-)
55525 .. 56850
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003662.1_g000014.1.cds

Sequence Viewer

Length: 1326 bp
atgagtgttcttgaataccctgaatacccagatgccattaacgccccggagcttcaggtctggaacaacgccgccttcgacgacaatgagggctctgagttctcctgcgccaccgttaaagcttcctggtcttccgaatccgattgcagcaaagagaatctgagcccggttccgaaaacccctgttttcgcggcgtcttcggtgccgtttaagccgctgaacggaaattcgcggcggttgtctgtggcgccgaagaagatgggctttgaggttgaagaagagaaaggtcgagacttggggaagatcgattcggagattgaggaaattgagaaggagataggccgattgaattcgaggctggagttgctgaaactcgagaaggcccagaaggcggcggagaagcgcagcagagttgtggcggcgaagttcatggagccaccgaagcagagtgtgaagaattccgatgggttgagaaagattgaggagtctttgaatttgagcgccaggccgaaggttaatcggagaggcatgagtttggggccgtcggagattatcgccggagccgggttccggcggccgagtaagcttgagataacccctgttcagaaaatacaggatcgccggaaatcttgcttctggaagcttcaggacattgatgaactgagggttactaaagagaggggcaaaagcacgagtcttagcccgaaatcgaggaagaccgcgtcgaaaatcggagcactgaaacaggctgcaacttcaatcgggggatctaagaggccggtgaagaaggaagacaaggttcttggttcaattgagcccaagaagcttttcaaagaaggggagaagtctgtgcctaataagaagccagtcaaggctgggagggttgtggcaagcaggtacaatcagattgggacttcttcggctgcggctgcggatggccggaagaggtctttgccggatgacgataaggaagatgggagccggtgtgagaagaagcgcgtgtcattggtggggaagccacgtggcattgggagggagtggtctaggagcgttggaccagagagtaggatgaagaagaggtgggagattcctagtgaggtggtggtgttccagggtgtggaggaggatggtgttgctgaaatgggtgctgtgaatgatgggctgccgaagattaggactgttcgatgtgttaacgacacgccaagggggtcagggccggcaaaaagggtggcggaattagttgggatgaagaagtattttagcaacagtgatgagttctgccaggaattgagttttgcggaagaggaggatggtgaagaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

48.74

Weight (kDa)

9.35

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 885
AccB1I GGYRCC 2 cut(s) 202, 247
AccB7I CCANNNNNTGG 1 cut(s) 1117
AccII CGCG 4 cut(s) 191, 232, 722, 999
AclWI GGATC 2 cut(s) 624, 775
AcoI YGGCCR 2 cut(s) 575, 937
AcsI RAATTY 4 cut(s) 226, 349, 457, 493
AcuI CTGAAG 2 cut(s) 38, 629
AcvI CACGTG 1 cut(s) 1022
AcyI GRCGYC 2 cut(s) 194, 248
AfaI GTAC 1 cut(s) 899
AfiI CCNNNNNNNGG 5 cut(s) 221, 391, 564, 570, 1117
AgsI TTSAA 7 cut(s) 14, 275, 349, 493, 759, 810, 832
AjnI CCWGG 4 cut(s) 125, 503, 1110, 1281
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 5 cut(s) 52, 122, 586, 643, 826
AluI AGCT 5 cut(s) 52, 122, 586, 643, 826
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 624, 775
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 8 cut(s) 340, 381, 506, 539, 575, 776, 937, 1214
ApeKI GCWGC 6 cut(s) 147, 405, 749, 923, 929, 1162
ApoI RAATTY 4 cut(s) 226, 349, 457, 493
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 5 cut(s) 110, 250, 405, 503, 999
AspS9I GGNCC 4 cut(s) 382, 539, 1055, 1214
AsuC2I CCSGG 3 cut(s) 47, 167, 565
AsuHPI GGTGA 2 cut(s) 793, 1325
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 1055
BanI GGYRCC 2 cut(s) 202, 247
BanII GRGCYC 3 cut(s) 95, 167, 819
BauI CACGAG 1 cut(s) 691
BbrPI CACGTG 1 cut(s) 1022
BbsI GAAGAC 4 cut(s) 123, 189, 722, 798
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 6 cut(s) 159, 417, 736, 910, 916, 1149
BccI CCATC 7 cut(s) 253, 458, 929, 968, 1121, 1151, 1304
BceAI ACGGC 2 cut(s) 190, 526
BciT130I CCWGG 4 cut(s) 127, 505, 1112, 1283
BcnI CCSGG 3 cut(s) 47, 167, 565
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 1044, 1092
BfoI RGCGCY 2 cut(s) 251, 504
BfuAI ACCTGC 1 cut(s) 885
BglI GCCNNNNNGGC 1 cut(s) 389
Bme1390I CCNGG 7 cut(s) 47, 127, 167, 505, 565, 1112, 1283
Bme18I GGWCC 1 cut(s) 1055
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 4 cut(s) 382, 539, 1055, 1214
BmiI GGNNCC 8 cut(s) 171, 204, 249, 435, 540, 562, 569, 980
BmrFI CCNGG 7 cut(s) 47, 127, 167, 505, 565, 1112, 1283
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 4 cut(s) 123, 189, 722, 798
BpmI CTGGAG 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 3 cut(s) 47, 167, 565
Bsa29I ATCGAT 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 1022
BsaHI GRCGYC 2 cut(s) 194, 248
BsaJI CCNNGG 3 cut(s) 45, 1111, 1202
BsaXI ACNNNNNCTCC 2 cut(s) 970, 1000
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 391, 564, 570, 1117
Bse118I RCCGGY 3 cut(s) 778, 981, 1216
Bse1I ACTGG 1 cut(s) 866
BseBI CCWGG 4 cut(s) 127, 505, 1112, 1283
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 45, 1111, 1202
BseGI GGATG 6 cut(s) 940, 964, 1074, 1132, 1251, 1315
BseLI CCNNNNNNNGG 5 cut(s) 221, 391, 564, 570, 1117
BseMII CTCAG 3 cut(s) 87, 152, 653
BseNI ACTGG 1 cut(s) 866
BseRI GAGGAG 3 cut(s) 497, 1136, 1319
BseX3I CGGCCG 1 cut(s) 575
BseXI GCAGC 6 cut(s) 159, 417, 736, 910, 916, 1149
BseYI CCCAGC 1 cut(s) 875
Bsh1236I CGCG 4 cut(s) 191, 232, 722, 999
Bsh1285I CGRYCG 1 cut(s) 578
BshFI GGCC 8 cut(s) 342, 383, 508, 541, 577, 778, 939, 1216
BshNI GGYRCC 2 cut(s) 202, 247
BshVI ATCGAT 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 5 cut(s) 221, 391, 564, 570, 1117
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 925
BsnI GGCC 8 cut(s) 342, 383, 508, 541, 577, 778, 939, 1216
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 4 cut(s) 95, 167, 739, 819
Bsp143I GATC 3 cut(s) 303, 616, 767
BspANI GGCC 8 cut(s) 342, 383, 508, 541, 577, 778, 939, 1216
BspCNI CTCAG 3 cut(s) 88, 153, 654
BspDI ATCGAT 1 cut(s) 306
BspFNI CGCG 4 cut(s) 191, 232, 722, 999
BspLI GGNNCC 8 cut(s) 171, 204, 249, 435, 540, 562, 569, 980
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 2 cut(s) 624, 775
BspT107I GGYRCC 2 cut(s) 202, 247
BsrFI RCCGGY 3 cut(s) 778, 981, 1216
BsrI ACTGG 1 cut(s) 866
BssAI RCCGGY 3 cut(s) 778, 981, 1216
BssECI CCNNGG 3 cut(s) 45, 1111, 1202
BssMI GATC 3 cut(s) 303, 616, 767
BssNI GRCGYC 2 cut(s) 194, 248
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 1202
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 4 cut(s) 127, 505, 1112, 1283
Bst4CI ACNGT 3 cut(s) 115, 1180, 1268
Bst6I CTCTTC 4 cut(s) 273, 938, 1070, 1296
BstACI GRCGYC 2 cut(s) 194, 248
BstBAI YACGTR 1 cut(s) 1022
BstC8I GCNNGC 2 cut(s) 892, 1218
BstDEI CTNAG 5 cut(s) 96, 161, 662, 698, 771
BstF5I GGATG 6 cut(s) 940, 964, 1074, 1132, 1251, 1315
BstFNI CGCG 4 cut(s) 191, 232, 722, 999
BstH2I RGCGCY 2 cut(s) 251, 504
BstHHI GCGC 5 cut(s) 110, 250, 405, 503, 999
BstKTI GATC 3 cut(s) 306, 619, 770
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 3 cut(s) 303, 616, 767
BstMCI CGRYCG 1 cut(s) 578
BstMWI GCNNNNNNNGC 8 cut(s) 41, 211, 364, 389, 442, 583, 823, 929
BstNI CCWGG 4 cut(s) 127, 505, 1112, 1283
BstSCI CCNGG 7 cut(s) 45, 125, 165, 503, 563, 1110, 1281
BstUI CGCG 4 cut(s) 191, 232, 722, 999
BstV1I GCAGC 6 cut(s) 159, 417, 736, 910, 916, 1149
BstV2I GAAGAC 4 cut(s) 123, 189, 722, 798
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
BstZI CGGCCG 1 cut(s) 575
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 8 cut(s) 342, 383, 508, 541, 577, 778, 939, 1216
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 6 cut(s) 940, 964, 1074, 1132, 1251, 1315
BtsIMutI CAGTG 2 cut(s) 737, 1273
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 2 cut(s) 892, 1218
CfoI GCGC 5 cut(s) 110, 250, 405, 503, 999
Cfr10I RCCGGY 3 cut(s) 778, 981, 1216
Cfr13I GGNCC 4 cut(s) 382, 539, 1055, 1214
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 2 cut(s) 183, 711
Csp6I GTAC 1 cut(s) 898
CspCI CAANNNNNGTGG 2 cut(s) 1209, 1244
CviAII CATG 2 cut(s) 430, 529
CviQI GTAC 1 cut(s) 898
DdeI CTNAG 5 cut(s) 96, 161, 662, 698, 771
DinI GGCGCC 1 cut(s) 249
DpnI GATC 3 cut(s) 305, 618, 769
DpnII GATC 3 cut(s) 303, 616, 767
EaeI YGGCCR 2 cut(s) 575, 937
EagI CGGCCG 1 cut(s) 575
Eam1104I CTCTTC 4 cut(s) 273, 938, 1070, 1296
EarI CTCTTC 4 cut(s) 273, 938, 1070, 1296
EciI GGCGGA 2 cut(s) 410, 1247
EclXI CGGCCG 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 1202
Eco24I GRGCYC 3 cut(s) 95, 167, 819
Eco47I GGWCC 1 cut(s) 1055
Eco52I CGGCCG 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 38, 629
Eco72I CACGTG 1 cut(s) 1022
Eco88I CYCGRG 1 cut(s) 374
EcoRI GAATTC 2 cut(s) 349, 457
EcoRII CCWGG 4 cut(s) 125, 503, 1110, 1281
EcoT14I CCWWGG 1 cut(s) 1202
EcoT38I GRGCYC 3 cut(s) 95, 167, 819
EgeI GGCGCC 1 cut(s) 249
EheI GGCGCC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 1202
FaeI CATG 2 cut(s) 433, 532
FaiI YATR 2 cut(s) 431, 530
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 925
FatI CATG 2 cut(s) 429, 528
FokI GGATG 6 cut(s) 947, 971, 1081, 1139, 1258, 1322
FriOI GRGCYC 3 cut(s) 95, 167, 819
FspBI CTAG 2 cut(s) 1044, 1092
GlaI GCGC 5 cut(s) 109, 249, 404, 502, 998
GsaI CCCAGC 1 cut(s) 879
GsuI CTGGAG 1 cut(s) 380
HaeII RGCGCY 2 cut(s) 251, 504
HaeIII GGCC 8 cut(s) 342, 383, 508, 541, 577, 778, 939, 1216
HgaI GACGC 2 cut(s) 183, 711
HhaI GCGC 5 cut(s) 110, 250, 405, 503, 999
Hin1I GRCGYC 2 cut(s) 194, 248
Hin1II CATG 2 cut(s) 433, 532
Hin6I GCGC 5 cut(s) 108, 248, 403, 501, 997
HinP1I GCGC 5 cut(s) 108, 248, 403, 501, 997
HincII GTYRAC 1 cut(s) 1192
HindII GTYRAC 1 cut(s) 1192
HindIII AAGCTT 4 cut(s) 120, 584, 641, 824
HinfI GANTC 6 cut(s) 137, 157, 308, 485, 694, 1087
HpaI GTTAAC 1 cut(s) 1192
HphI GGTGA 2 cut(s) 793, 1325
Hpy166II GTNNAC 1 cut(s) 1192
Hpy188III TCNNGA 6 cut(s) 11, 61, 290, 376, 637, 647
Hpy8I GTNNAC 1 cut(s) 1192
Hpy99I CGWCG 3 cut(s) 83, 547, 727
HpyAV CCTTC 7 cut(s) 85, 325, 373, 382, 505, 781, 830
HpyCH4III ACNGT 3 cut(s) 115, 1180, 1268
HpyCH4IV ACGT 1 cut(s) 1021
HpyCH4V TGCA 2 cut(s) 147, 752
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 211, 364, 389, 442, 583, 823, 929
HpyF3I CTNAG 5 cut(s) 96, 161, 662, 698, 771
HpySE526I ACGT 1 cut(s) 1021
Hsp92I GRCGYC 2 cut(s) 194, 248
Hsp92II CATG 2 cut(s) 433, 532
HspAI GCGC 5 cut(s) 108, 248, 403, 501, 997
KasI GGCGCC 1 cut(s) 247
KroI GCCGGC 1 cut(s) 1216
KroNI GCCGGC 1 cut(s) 1218
KspAI GTTAAC 1 cut(s) 1192
Kzo9I GATC 3 cut(s) 303, 616, 767
LmnI GCTCC 6 cut(s) 49, 433, 560, 734, 978, 1047
Lsp1109I GCAGC 6 cut(s) 159, 417, 736, 910, 916, 1149
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 1044, 1092
MaeII ACGT 1 cut(s) 1021
MaeIII GTNAC 1 cut(s) 667
MalI GATC 3 cut(s) 305, 618, 769
MboI GATC 3 cut(s) 303, 616, 767
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 4 cut(s) 95, 167, 739, 819
MluCI AATT 8 cut(s) 226, 324, 349, 457, 493, 810, 1235, 1286
Mly113I GGCGCC 1 cut(s) 248
MlyI GAGTC 2 cut(s) 494, 703
MmeI TCCRAC 2 cut(s) 525, 1033
MroNI GCCGGC 1 cut(s) 1216
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 5 cut(s) 39, 117, 210, 516, 1191
MspA1I CMGCKG 1 cut(s) 217
MspR9I CCNGG 7 cut(s) 47, 127, 167, 505, 565, 1112, 1283
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 4 cut(s) 127, 505, 1112, 1283
MvnI CGCG 4 cut(s) 191, 232, 722, 999
MwoI GCNNNNNNNGC 8 cut(s) 41, 211, 364, 389, 442, 583, 823, 929
NaeI GCCGGC 1 cut(s) 1218
NarI GGCGCC 1 cut(s) 248
NciI CCSGG 3 cut(s) 47, 167, 565
NdeII GATC 3 cut(s) 303, 616, 767
NgoMIV GCCGGC 1 cut(s) 1216
NlaIII CATG 2 cut(s) 433, 532
NlaIV GGNNCC 8 cut(s) 171, 204, 249, 435, 540, 562, 569, 980
NmeAIII GCCGAG 1 cut(s) 603
PaeR7I CTCGAG 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 1218
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 4 cut(s) 137, 157, 308, 1087
PflFI GACNNNGTC 1 cut(s) 721
PflMI CCANNNNNTGG 1 cut(s) 1117
PleI GAGTC 2 cut(s) 493, 702
PluTI GGCGCC 1 cut(s) 251
PmaCI CACGTG 1 cut(s) 1022
PmlI CACGTG 1 cut(s) 1022
PpsI GAGTC 2 cut(s) 493, 702
Ppu21I YACGTR 1 cut(s) 1022
Psp6I CCWGG 4 cut(s) 125, 503, 1110, 1281
PspCI CACGTG 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 875
PspGI CCWGG 4 cut(s) 125, 503, 1110, 1281
PspN4I GGNNCC 8 cut(s) 171, 204, 249, 435, 540, 562, 569, 980
PspPI GGNCC 4 cut(s) 382, 539, 1055, 1214
PsuI RGATCY 1 cut(s) 767
PsyI GACNNNGTC 1 cut(s) 721
RsaI GTAC 1 cut(s) 899
RsaNI GTAC 1 cut(s) 898
SaqAI TTAA 5 cut(s) 39, 117, 210, 516, 1191
Sau3AI GATC 3 cut(s) 303, 616, 767
Sau96I GGNCC 4 cut(s) 382, 539, 1055, 1214
SchI GAGTC 2 cut(s) 494, 703
ScrFI CCNGG 7 cut(s) 47, 127, 167, 505, 565, 1112, 1283
SduI GDGCHC 4 cut(s) 95, 167, 739, 819
SfaNI GCATC 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 374
SinI GGWCC 1 cut(s) 1055
SlaI CTCGAG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 374, 587
SmoI CTYRAG 2 cut(s) 374, 587
Sse9I AATT 8 cut(s) 226, 324, 349, 457, 493, 810, 1235, 1286
SspDI GGCGCC 1 cut(s) 247
SspMI CTAG 2 cut(s) 1044, 1092
StyD4I CCNGG 7 cut(s) 45, 125, 165, 503, 563, 1110, 1281
StyI CCWWGG 1 cut(s) 1202
TaaI ACNGT 3 cut(s) 115, 1180, 1268
TaiI ACGT 1 cut(s) 1024
TaqI TCGA 8 cut(s) 78, 289, 306, 353, 375, 710, 725, 1183
TasI AATT 8 cut(s) 226, 324, 349, 457, 493, 810, 1235, 1286
TauI GCSGC 8 cut(s) 74, 194, 217, 235, 395, 422, 577, 929
TfiI GAWTC 4 cut(s) 137, 157, 308, 1087
Tru1I TTAA 5 cut(s) 39, 117, 210, 516, 1191
Tru9I TTAA 5 cut(s) 39, 117, 210, 516, 1191
TscAI CASTG 2 cut(s) 744, 1273
TseI GCWGC 6 cut(s) 147, 405, 749, 923, 929, 1162
TspDTI ATGAA 4 cut(s) 418, 672, 1085, 1262
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 2 cut(s) 744, 1273
Tth111I GACNNNGTC 1 cut(s) 721
Van91I CCANNNNNTGG 1 cut(s) 1117
VpaK11BI GGWCC 1 cut(s) 1055
XapI RAATTY 4 cut(s) 226, 349, 457, 493
XhoI CTCGAG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 2 cut(s) 1044, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.