Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

34026024 .. 34028674

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATGGAAACAAAGTTATGGTTGATATCCCAGCATCTCAAATGCGACTTGAGTCCCTCTCAACTGCTGGATGATGAAAAGGAAGATGGGAGCCGGTGTGAGAGGAAGCGCGCGTCATTGGTGGGGCCACGTGGCATTGGGAGGGAGGGGTCAAGGAGCATTGGACCGGAGAGTAGGATGAAGAAGAGGTGGGAGATTCCTAGTGAGGTGGTGGTGTTCCAGGGTTTGGAGGAGGACGGTGTTGCTGAAATGGTATCGATGAGCAGGCATGATGTTTCTGAGCTGGAACAAAGGCTTTCAGAACAATCAAAGATACTCTCAAGTATTCAACAACAGGTTGATGATTTGGCATCAAAGCATGCTTACAACCCAGATGAGGAGTATGTAGAGGTAGAATCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.3

Weight (kDa)

4.96

Isoelectric Point (pI)

69.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	90 - 133	2.9e-14	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	2 cut(s)	111, 113
AcvI	CACGTG	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	226, 376
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
AoxI	GGCC	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	111, 113
AspS9I	GGNCC	2 cut(s)	125, 164
AvaII	GGWCC	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	131
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	221
BfaI	CTAG	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	125, 164
BmiI	GGNNCC	2 cut(s)	92, 126
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	43, 359
BoxI	GACNNNNGTC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpuEI	CTTGAG	2 cut(s)	70, 304
Bsa29I	ATCGAT	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 376
Bse118I	RCCGGY	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	76, 183
BseLI	CCNNNNNNNGG	2 cut(s)	226, 376
BseMII	CTCAG	1 cut(s)	270
BsePI	GCGCGC	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	245, 392
BseYI	CCCAGC	1 cut(s)	30
Bsh1236I	CGCG	2 cut(s)	111, 113
BshFI	GGCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	94, 167
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	226, 376
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	257
BspFNI	CGCG	2 cut(s)	111, 113
BspLI	GGNNCC	2 cut(s)	92, 126
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	220
BssHII	GCGCGC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	111, 266, 360
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	76, 183
BstFNI	CGCG	2 cut(s)	111, 113
BstHHI	GCGC	2 cut(s)	111, 113
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	362
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	111, 113
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	76, 183
Cac8I	GCNNGC	3 cut(s)	111, 266, 360
CfoI	GCGC	2 cut(s)	111, 113
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	125, 164
ClaI	ATCGAT	1 cut(s)	257
CseI	GACGC	1 cut(s)	102
CviAII	CATG	2 cut(s)	269, 359
CviJI	RGCY	4 cut(s)	93, 127, 283, 295
CviKI_1	RGCY	4 cut(s)	93, 127, 283, 295
DdeI	CTNAG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	164
Eco72I	CACGTG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	27
FaeI	CATG	2 cut(s)	272, 362
FaiI	YATR	4 cut(s)	19, 270, 360, 384
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	268, 358
FokI	GGATG	2 cut(s)	83, 190
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	110, 112
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	2 cut(s)	94, 167
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	111, 113
Hin1II	CATG	2 cut(s)	272, 362
Hin6I	GCGC	2 cut(s)	109, 111
HinP1I	GCGC	2 cut(s)	109, 111
HinfI	GANTC	3 cut(s)	52, 196, 395
HpaII	CCGG	2 cut(s)	94, 167
Hpy188I	TCNGA	2 cut(s)	280, 301
Hpy188III	TCNNGA	1 cut(s)	399
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	272, 362
HspAI	GCGC	2 cut(s)	109, 111
LmnI	GCTCC	2 cut(s)	90, 156
LweI	GCATC	2 cut(s)	43, 359
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	130
MboII	GAAGA	3 cut(s)	95, 193, 196
MlyI	GAGTC	1 cut(s)	61
MspI	CCGG	2 cut(s)	94, 167
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	111, 113
NlaIII	CATG	2 cut(s)	272, 362
NlaIV	GGNNCC	2 cut(s)	92, 126
NspI	RCATGY	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	362
PauI	GCGCGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	196, 395
PflMI	CCANNNNNTGG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	60
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	92, 126
PspPI	GGNCC	2 cut(s)	125, 164
PteI	GCGCGC	1 cut(s)	109
Sau96I	GGNCC	2 cut(s)	125, 164
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	6 cut(s)	133, 191, 210, 285, 339, 393
SfaNI	GCATC	2 cut(s)	43, 359
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	49, 319
SmoI	CTYRAG	2 cut(s)	49, 319
SphI	GCATGC	1 cut(s)	362
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	196, 395
TspDTI	ATGAA	2 cut(s)	90, 194
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	164
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.