RLG00000010298

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
384735 .. 385174
440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010298

Sequence Viewer

Length: 312 bp
ATGAGTGTTCTTGAATACCTAGATGCCATTAACTTCTCGGAGCTTCAGGTCTGGAACAATGCTTCATCACCTTCGACGACAATGAAGGCTCTGAATTCTCCATGGCTATCGGTGGCGCTGAAGAAGTTGGGGTTTGAGGTTGAAAAAGAGAAAGGTCGAGACCTGGGGAAGATTGATTCGGAGATTGAGGAAATCGAGAAGGAGATAAGCCGCTTGAGTTCGAGGCTGGAATTGCGGAAACTAGAGAAGACCCATAAGGTAGTAGAGAAGCGCGGCAGAGTTGTGGCGGCGAATTTCATGGAGCCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.76

Weight (kDa)

6.61

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 211, 235, 273, 287
AcsI RAATTY 2 cut(s) 94, 292
AcuI CTGAAG 2 cut(s) 29, 140
AgsI TTSAA 2 cut(s) 14, 143
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 94, 292
AspLEI GCGC 2 cut(s) 118, 273
AsuHPI GGTGA 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 20, 242
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 3 cut(s) 211, 274, 288
BlsI GCNGC 3 cut(s) 212, 275, 289
Bme1390I CCNGG 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 101, 163
BsaXI ACNNNNNCTCC 1 cut(s) 293
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 101, 163
Bsh1236I CGCG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 4 cut(s) 211, 235, 273, 287
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 101, 163
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 118, 273
BstMAI GTCTC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 101
CfoI GCGC 2 cut(s) 118, 273
CviAII CATG 2 cut(s) 102, 298
CviJI RGCY 6 cut(s) 43, 89, 106, 210, 226, 304
CviKI_1 RGCY 6 cut(s) 43, 89, 106, 210, 226, 304
Eco130I CCWWGG 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 29, 140
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 2 cut(s) 105, 301
FaiI YATR 3 cut(s) 103, 255, 299
FatI CATG 2 cut(s) 101, 297
Fnu4HI GCNGC 3 cut(s) 211, 274, 288
Fsp4HI GCNGC 3 cut(s) 211, 274, 288
FspBI CTAG 2 cut(s) 20, 242
GlaI GCGC 2 cut(s) 117, 272
GluI GCNGC 3 cut(s) 211, 274, 288
HaeII RGCGCY 1 cut(s) 119
HhaI GCGC 2 cut(s) 118, 273
Hin1II CATG 2 cut(s) 105, 301
Hin6I GCGC 2 cut(s) 116, 271
HinP1I GCGC 2 cut(s) 116, 271
HinfI GANTC 1 cut(s) 176
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 3 cut(s) 40, 93, 181
Hpy188III TCNNGA 4 cut(s) 11, 52, 158, 196
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 79, 81, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92II CATG 2 cut(s) 105, 301
HspAI GCGC 2 cut(s) 116, 271
LmnI GCTCC 2 cut(s) 40, 301
LpnPI CCDG 5 cut(s) 32, 37, 149, 176, 212
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 20, 242
MboII GAAGA 3 cut(s) 133, 181, 259
MluCI AATT 3 cut(s) 94, 230, 292
MnlI CCTC 3 cut(s) 130, 181, 216
MseI TTAA 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 232
NcoI CCATGG 1 cut(s) 101
NlaIII CATG 2 cut(s) 105, 301
NlaIV GGNNCC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 212, 275, 289
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 211, 274, 288
ScrFI CCNGG 1 cut(s) 164
SetI ASST 8 cut(s) 21, 45, 51, 73, 141, 157, 165, 261
SfaNI GCATC 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 3 cut(s) 94, 230, 292
SsiI CCGC 4 cut(s) 211, 235, 273, 287
SspMI CTAG 2 cut(s) 20, 242
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 101
TaqI TCGA 4 cut(s) 74, 157, 195, 221
TasI AATT 3 cut(s) 94, 230, 292
TauI GCSGC 3 cut(s) 213, 276, 290
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 54, 98, 286
XapI RAATTY 2 cut(s) 94, 292
XspI CTAG 2 cut(s) 20, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.