Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Reverse (-)

10273878 .. 10278665

Gene Structure 4788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAATTTCAGACGACCCACGACAATCGCCGAACAACCCCCTCTAAATTTGATATGTTGCCTAAATTCGATAGGTTTCCCAAATTCAATTGGTTTTGAGGTTGAAGAGGAGAAAGGTCGAAATTCAGGGAAGATCGAGAAGGAGATAAGCCTACTGAATTCGAGGCTGAAGTTGCTGAAACTCGAGAAGGCGGCGGAGAGGCGCGGCAGAGTGGCGGCGGCGAAGTTCATGCAACCGCAGGCGAAGCAAAGTGTTAAGAATTCCGATGCGTTTTGTATTCTCCTCCCTGTTCATGAGTTTGGGAGGAACATATGGAGAACCAAAGGAGCAGAACAGAAGGCAGCAAAGGACTTCCTTGATTCCATTAAACTGCTAGAAGGAGAGCTTGGAGACAGGTCATACTTTGGGGGTGAGACCCTTGGGTTTGATGATGTAGCACTGTTTCCTCTCTATTCATGGTTCTCTGTGTATGAGAAACGTGGCACAACTTCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

166

Amino Acids

18.58

Weight (kDa)

8.99

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	6 cut(s)	191, 194, 204, 215, 218, 236
AcsI	RAATTY	7 cut(s)	4, 46, 64, 82, 121, 157, 259
AcuI	CTGAAG	2 cut(s)	188, 474
AgsI	TTSAA	2 cut(s)	87, 104
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	384, 407
Ama87I	CYCGRG	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	7 cut(s)	4, 46, 64, 82, 121, 157, 259
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	422
AvaI	CYCGRG	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BcoDI	GTCTC	2 cut(s)	384, 407
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	192, 205, 216, 219, 342
BlsI	GCNGC	5 cut(s)	193, 206, 217, 220, 343
BmeT110I	CYCGRG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	122, 272
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	182
BsmAI	GTCTC	2 cut(s)	384, 407
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	6 cut(s)	191, 194, 204, 215, 218, 236
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	2 cut(s)	384, 407
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 244
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	204
CviAII	CATG	3 cut(s)	229, 293, 456
CviJI	RGCY	3 cut(s)	150, 166, 385
CviKI_1	RGCY	3 cut(s)	150, 166, 385
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	188, 474
Eco88I	CYCGRG	1 cut(s)	182
EcoRI	GAATTC	2 cut(s)	157, 259
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	3 cut(s)	232, 296, 459
FaiI	YATR	9 cut(s)	55, 230, 294, 311, 313, 400, 457, 471, 496
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	3 cut(s)	228, 292, 455
FauNDI	CATATG	1 cut(s)	311
Fnu4HI	GCNGC	5 cut(s)	192, 205, 216, 219, 342
Fsp4HI	GCNGC	5 cut(s)	192, 205, 216, 219, 342
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	5 cut(s)	192, 205, 216, 219, 342
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	232, 296, 459
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	11, 265
Hpy188III	TCNNGA	3 cut(s)	136, 184, 293
HpyAV	CCTTC	4 cut(s)	133, 181, 331, 371
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 244
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	3 cut(s)	232, 296, 459
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	4 cut(s)	111, 224, 300, 379
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	478
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	2 cut(s)	116, 142
MfeI	CAATTG	1 cut(s)	87
MluCI	AATT	8 cut(s)	4, 46, 64, 82, 87, 121, 157, 259
MnlI	CCTC	8 cut(s)	51, 91, 100, 156, 192, 293, 297, 456
MseI	TTAA	2 cut(s)	255, 366
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	172, 244
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	3 cut(s)	232, 296, 459
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	193, 206, 217, 220, 343
SaqAI	TTAA	2 cut(s)	255, 366
SatI	GCNGC	5 cut(s)	192, 205, 216, 219, 342
Sau3AI	GATC	1 cut(s)	132
SetI	ASST	6 cut(s)	76, 102, 118, 387, 398, 481
SfaNI	GCATC	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	8 cut(s)	4, 46, 64, 82, 87, 121, 157, 259
SsiI	CCGC	6 cut(s)	191, 194, 204, 215, 218, 236
SspMI	CTAG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	5 cut(s)	68, 118, 135, 161, 183
TasI	AATT	8 cut(s)	4, 46, 64, 82, 87, 121, 157, 259
TauI	GCSGC	4 cut(s)	194, 207, 218, 221
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	255, 366
Tru9I	TTAA	2 cut(s)	255, 366
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	17, 217, 281, 444
TspRI	CASTG	1 cut(s)	444
XapI	RAATTY	7 cut(s)	4, 46, 64, 82, 121, 157, 259
XhoI	CTCGAG	1 cut(s)	182
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.