FvH4_6g44594

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000643
Physical Location & Seq
Forward (+)
34352844 .. 34353677
834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44594.t1

Sequence Viewer

Length: 456 bp
ATGGATACCCAGCTTAAGACTCCAAGATTCAAAATTGAGCCCAAGAAGCTTTTTAAAGAAGGGGAGAAGTCTGTGCCGAACAAGAAAAGGTCTTTGCCGGATGATGATAAGGAAGATGGGAGCCGGTGTGAGAAGAAGCGCGTGTCATTGGTGGGGAAGCCGCGTGGCATTGGGAGGGAGGGGTCTAGGAGCGTTGGAGCGGAGAGTAGGATGAAGAAGAGGTGGGAGATTCCTAGTGAGGTGGTGGTGTTCCAGGGTGTGGAGGAGGATGGTGTTGCTGAAATTGATGTGCTGCCGAAGATTAGGACTGTTAGATGTGTTAATGACACGCCGAGGGGATCTGGGCCGGCGAAAAGGGTGGCTGAATTGGTTGGGATGAAGAAGTATTTTAGCAACAGTGATGAGTTCTGCCAGGAGTTGAGTTTTGCAGAAGAGGAGGATGGTGAGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.05

Weight (kDa)

6.48

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 200
AccII CGCG 2 cut(s) 141, 163
AciI CCGC 2 cut(s) 161, 200
AclWI GGATC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 259
AflII CTTAAG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 2 cut(s) 252, 411
AluBI AGCT 2 cut(s) 13, 49
AluI AGCT 2 cut(s) 13, 49
AlwI GGATC 1 cut(s) 346
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 292
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 455
BanII GRGCYC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 110, 263, 434
BciT130I CCWGG 2 cut(s) 254, 413
BfaI CTAG 2 cut(s) 186, 234
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 161, 293
BlsI GCNGC 2 cut(s) 162, 294
Bme1390I CCNGG 2 cut(s) 254, 413
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 2 cut(s) 254, 413
BsaJI CCNNGG 2 cut(s) 253, 332
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 2 cut(s) 123, 346
BseBI CCWGG 2 cut(s) 254, 413
BseDI CCNNGG 2 cut(s) 253, 332
BseGI GGATG 5 cut(s) 106, 216, 274, 381, 445
BseLI CCNNNNNNNGG 1 cut(s) 259
BseRI GAGGAG 2 cut(s) 278, 449
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 9
Bsh1236I CGCG 2 cut(s) 141, 163
BshFI GGCC 1 cut(s) 346
BsiSI CCGG 3 cut(s) 98, 124, 347
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 2 cut(s) 161, 200
BspANI GGCC 1 cut(s) 346
BspFNI CGCG 2 cut(s) 141, 163
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 2 cut(s) 123, 346
BssAI RCCGGY 2 cut(s) 123, 346
BssECI CCNNGG 2 cut(s) 253, 332
BssMI GATC 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 254, 413
Bst4CI ACNGT 2 cut(s) 310, 398
Bst6I CTCTTC 2 cut(s) 212, 426
BstAFI CTTAAG 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 348
BstF5I GGATG 5 cut(s) 106, 216, 274, 381, 445
BstFNI CGCG 2 cut(s) 141, 163
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 254, 413
BstSCI CCNGG 2 cut(s) 252, 411
BstUI CGCG 2 cut(s) 141, 163
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 5 cut(s) 106, 216, 274, 381, 445
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 2 cut(s) 123, 346
Cfr13I GGNCC 1 cut(s) 344
CviJI RGCY 7 cut(s) 13, 40, 49, 123, 160, 346, 362
CviKI_1 RGCY 7 cut(s) 13, 40, 49, 123, 160, 346, 362
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 212, 426
EarI CTCTTC 2 cut(s) 212, 426
Eco24I GRGCYC 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 252, 411
EcoT38I GRGCYC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 161, 293
FokI GGATG 5 cut(s) 113, 223, 281, 388, 452
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 161, 293
FspBI CTAG 2 cut(s) 186, 234
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 161, 293
GsaI CCCAGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 346
HapII CCGG 3 cut(s) 98, 124, 347
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 3 cut(s) 19, 27, 229
HpaII CCGG 3 cut(s) 98, 124, 347
HphI GGTGA 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 310, 398
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HspAI GCGC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 338
LmnI GCTCC 3 cut(s) 120, 189, 197
LpnPI CCDG 9 cut(s) 23, 111, 137, 239, 266, 327, 360, 398, 425
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 2 cut(s) 186, 234
MalI GATC 1 cut(s) 340
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 338
MboII GAAGA 7 cut(s) 125, 145, 226, 229, 310, 391, 443
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 33, 282, 365
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 346
MseI TTAA 3 cut(s) 15, 54, 321
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 3 cut(s) 98, 124, 347
MspR9I CCNGG 2 cut(s) 254, 413
MvaI CCWGG 2 cut(s) 254, 413
MvnI CGCG 2 cut(s) 141, 163
MwoI GCNNNNNNNGC 1 cut(s) 46
NaeI GCCGGC 1 cut(s) 348
NdeII GATC 1 cut(s) 338
NgoMIV GCCGGC 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 357
PdiI GCCGGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 27, 229
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 2 cut(s) 162, 294
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 252, 411
PspFI CCCAGC 1 cut(s) 9
PspGI CCWGG 2 cut(s) 252, 411
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 338
SaqAI TTAA 3 cut(s) 15, 54, 321
SatI GCNGC 2 cut(s) 161, 293
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 254, 413
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 15, 51, 92, 224, 243
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 33, 282, 365
SsiI CCGC 2 cut(s) 161, 200
SspMI CTAG 2 cut(s) 186, 234
StyD4I CCNGG 2 cut(s) 252, 411
TaaI ACNGT 2 cut(s) 310, 398
TasI AATT 3 cut(s) 33, 282, 365
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 2 cut(s) 27, 229
Tru1I TTAA 3 cut(s) 15, 54, 321
Tru9I TTAA 3 cut(s) 15, 54, 321
TscAI CASTG 1 cut(s) 403
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 227, 392
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 1 cut(s) 259
Vha464I CTTAAG 1 cut(s) 14
XspI CTAG 2 cut(s) 186, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.