Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001403.1

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

146556 .. 147005

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001403.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgatgctgtttaagctgctgaacgaaaattcgcggcagctattggtggcgccgaagaagatggggtttgaggttgaagaagagaaaggtctagacctagggaagatctattcggagattgaggaaattgagaaagagataagccgattgaattcgaggctggaattgcggaaactagtgaaggcccagaaagtgagtgtgaagaattccgatgggttgagaaagattgaggagtctttgaatttgagcgccaagctgaaggttaatcggagaggtgtgagtttggggtcgtcggagattatcgccggtgccgagttctggcaaccaagcaagcttgagataacccctgttcagaaaatacaggaacactgggaatcttgcttcttgaagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

15.04

Weight (kDa)

8.99

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	49, 308
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	34, 169
AcsI	RAATTY	4 cut(s)	28, 151, 205, 241
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	4 cut(s)	77, 151, 241, 388
AhlI	ACTAGT	1 cut(s)	175
AluBI	AGCT	5 cut(s)	16, 40, 256, 334, 391
AluI	AGCT	5 cut(s)	16, 40, 256, 334, 391
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	16, 37
ApoI	RAATTY	4 cut(s)	28, 151, 205, 241
AspA2I	CCTAGG	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	52, 251
AspS9I	GGNCC	1 cut(s)	184
AvrII	CCTAGG	1 cut(s)	97
BanI	GGYRCC	2 cut(s)	49, 308
BbvI	GCAGC	2 cut(s)	3, 49
BccI	CCATC	2 cut(s)	55, 206
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	3 cut(s)	92, 98, 176
BfoI	RGCGCY	2 cut(s)	53, 252
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	3 cut(s)	17, 35, 38
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	3 cut(s)	18, 36, 39
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	51, 310
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	3, 49
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	2 cut(s)	49, 308
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	318
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	2 cut(s)	34, 169
BspANI	GGCC	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	51, 310
BspT107I	GGYRCC	2 cut(s)	49, 308
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	332
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	2 cut(s)	53, 252
BstHHI	GCGC	2 cut(s)	52, 251
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 166
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	3, 49
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	2 cut(s)	52, 251
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	184
CviJI	RGCY	8 cut(s)	16, 40, 144, 160, 185, 256, 334, 391
CviKI_1	RGCY	8 cut(s)	16, 40, 144, 160, 185, 256, 334, 391
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
EcoRI	GAATTC	2 cut(s)	151, 205
EcoT14I	CCWWGG	1 cut(s)	97
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	17, 35, 38
Fsp4HI	GCNGC	3 cut(s)	17, 35, 38
FspBI	CTAG	3 cut(s)	92, 98, 176
GlaI	GCGC	2 cut(s)	51, 250
GluI	GCNGC	3 cut(s)	17, 35, 38
HaeII	RGCGCY	2 cut(s)	53, 252
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	306
HhaI	GCGC	2 cut(s)	52, 251
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	2 cut(s)	50, 249
HinP1I	GCGC	2 cut(s)	50, 249
HindIII	AAGCTT	2 cut(s)	332, 389
HinfI	GANTC	2 cut(s)	233, 374
HpaII	CCGG	1 cut(s)	306
Hpy188I	TCNGA	5 cut(s)	115, 211, 270, 295, 354
Hpy188III	TCNNGA	2 cut(s)	92, 385
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	175, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 166
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	2 cut(s)	50, 249
KasI	GGCGCC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	105
LpnPI	CCDG	7 cut(s)	146, 200, 304, 319, 347, 355, 360
Lsp1109I	GCAGC	2 cut(s)	3, 49
MaeI	CTAG	3 cut(s)	92, 98, 176
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	6 cut(s)	67, 70, 89, 92, 115, 214
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	6 cut(s)	28, 126, 151, 164, 205, 241
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	5 cut(s)	64, 115, 150, 223, 266
MseI	TTAA	2 cut(s)	12, 264
MspI	CCGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	13, 166
NarI	GGCGCC	1 cut(s)	50
NdeII	GATC	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	51, 310
NmeAIII	GCCGAG	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	18, 36, 39
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	51, 310
PspPI	GGNCC	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	12, 264
SatI	GCNGC	3 cut(s)	17, 35, 38
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	51
SgrAI	CRCCGGYG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	6 cut(s)	28, 126, 151, 164, 205, 241
SsiI	CCGC	2 cut(s)	34, 169
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	3 cut(s)	92, 98, 176
StyI	CCWWGG	1 cut(s)	97
TaqI	TCGA	1 cut(s)	155
TasI	AATT	6 cut(s)	28, 126, 151, 164, 205, 241
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	12, 264
Tru9I	TTAA	2 cut(s)	12, 264
TscAI	CASTG	1 cut(s)	374
TseI	GCWGC	2 cut(s)	16, 37
TspRI	CASTG	1 cut(s)	374
XapI	RAATTY	4 cut(s)	28, 151, 205, 241
XbaI	TCTAGA	1 cut(s)	91
XmaJI	CCTAGG	1 cut(s)	97
XspI	CTAG	3 cut(s)	92, 98, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.