Rh1AG163700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000643
Physical Location & Seq
Reverse (-)
31391913 .. 31392197
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG163700.1

Sequence Viewer

Length: 285 bp
ATGGAAACAAAGTTATGGTTGATATCCCAGCATCTCAAATGCGACTTGAGTCCCTCTCAACTGCCGGATGATGATAAGGAAGATGGGAGCCGGTGTGAGAGGAAGCGCGTGTCATTGGTGGGGAAGCCACGTGGCATTGGGAGGGAGGGGTCAAGGAGCGTTGGACCGGAGAGTAGGATGAAGAAGAGGTGGGAGATTCCTAGTGAGGTGGTGGTGTTCCAGGTTTTGGAGGAGGACGGTGTTGCTGAAATGGGTGATGTGCTGCCGAAGATTAGGACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.65

Weight (kDa)

6.59

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AccII CGCG 1 cut(s) 108
AcvI CACGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 226
AjnI CCWGG 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 262
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 164, 276
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 164, 276
BbrPI CACGTG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 221
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 2 cut(s) 164, 276
BmgT120I GGNCC 2 cut(s) 164, 276
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 90
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 73, 183
BseLI CCNNNNNNNGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 65, 91, 167
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 36
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 131
BstF5I GGATG 2 cut(s) 73, 183
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 221
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 73, 183
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 164, 276
CviJI RGCY 2 cut(s) 90, 127
CviKI_1 RGCY 2 cut(s) 90, 127
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 164, 276
Eco72I CACGTG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 24
FaiI YATR 1 cut(s) 16
FaqI GGGAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 2 cut(s) 80, 190
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 31
HapII CCGG 3 cut(s) 65, 91, 167
HhaI GCGC 1 cut(s) 108
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 49, 196
HpaII CCGG 3 cut(s) 65, 91, 167
HphI GGTGA 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 130
HspAI GCGC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 87, 156
LpnPI CCDG 6 cut(s) 41, 78, 104, 180, 206, 233
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 130
MboII GAAGA 4 cut(s) 92, 193, 196, 280
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 8 cut(s) 64, 93, 135, 139, 180, 199, 223, 226
MspI CCGG 3 cut(s) 65, 91, 167
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 131
PshAI GACNNNNGTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 219
PspCI CACGTG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 2 cut(s) 164, 276
SatI GCNGC 1 cut(s) 263
Sau96I GGNCC 2 cut(s) 164, 276
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 221
SetI ASST 4 cut(s) 133, 191, 210, 225
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 2 cut(s) 164, 276
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 133
TfiI GAWTC 1 cut(s) 196
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 164, 276
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.