Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

40646124 .. 40647029

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGTTTCCCGTTACTCTCGGCTGCTGCAAGAAGGCTTGAAGGTAAGGTAGCAGTGATCACCGGTGAAGCCAGTGGCATCGGAGAATCCACCGCCAGACTCTTCTCCAGACACGGCGCTAAAGTCGTGATCGCTGACGTGCAAGATGACTTGGGCCAATCCGTTTGCAGAGACCTAAACCCTTCAACCACCACCTTCATCCATTGTGACGTGACGAATGAAAAAGACTTCGAAAACGCTGTGAACAGGGCCATCACCAAGTATGGAAAGCTAGACATTATGTTCAACAACGCTGGAATCAGCGACGTGGTCAACCCAAACATCCTCGACAACAACGAGGCCGATTTCGAGCAGGTCCTCGGAGTGAACTTGGTCGGTGTCTTCTTGGGGATCAAGCATGCGGCTCGGGCAATGATGGGAGCTCGAAAAGGGACTATTATCAACCTGGCTAGCGTTTGCTCGATCATAGGGGGTGGCGCGTCGCATGCGTACATGAGTTCGAAGCATGGAGTCGAGGGGCTCACGAAGAACACAGCGTTGGAGCTCGGAAAGTACGGAATACGTGTGAATTGTGTGTCGCCGTATTTGGTGGAGACGTCGCTGACTAAGAAATTCTTTAAGTTCGATGATGAAGGAGTGGGTGGTGCTTACTCCAACCTCAACGGGGCAGTGCCGAAGGCGGAAGATGTGGCAGAGGCTGTTCTATACTTGGGGAGTGATGAGTCCAAGTATGTTAGTGGGCATAATTTGATAGTAGATGGAGGCTACACTATTACCAACTCAAGGTTCTGTATGTTTGAGCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

269

Amino Acids

28.7

Weight (kDa)

5.7

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	16 - 207	6.1e-52	short chain dehydrogenase
SDR	PF23441	19 - 256	3.1e-06	SDR-like rossmann domain
adh_short_C2	PF13561	23 - 257	3.2e-65	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	343
AccII	CGCG	1 cut(s)	479
AciI	CCGC	3 cut(s)	93, 401, 680
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	596
AfaI	GTAC	2 cut(s)	491, 554
AfiI	CCNNNNNNNGG	2 cut(s)	664, 783
AflIII	ACRYGT	1 cut(s)	562
AgeI	ACCGGT	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	41, 186, 286
AjiI	CACGTC	3 cut(s)	139, 211, 307
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 553, 770, 802
AluBI	AGCT	3 cut(s)	271, 422, 544
AluI	AGCT	3 cut(s)	271, 422, 544
Alw21I	GWGCWC	2 cut(s)	424, 546
Alw26I	GTCTC	2 cut(s)	165, 587
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	154, 249, 339
ApeKI	GCWGC	2 cut(s)	23, 26
ApoI	RAATTY	1 cut(s)	611
AsiGI	ACCGGT	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	119, 479
AspS9I	GGNCC	3 cut(s)	154, 249, 355
AsuHPI	GGTGA	3 cut(s)	52, 77, 247
AsuII	TTCGAA	2 cut(s)	231, 500
AsuNHI	GCTAGC	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	3 cut(s)	424, 522, 546
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	2 cut(s)	424, 546
BbvI	GCAGC	2 cut(s)	10, 13
BccI	CCATC	3 cut(s)	260, 409, 752
BceAI	ACGGC	2 cut(s)	130, 565
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	446
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	165, 587
BfaI	CTAG	2 cut(s)	272, 450
BfoI	RGCGCY	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	24, 27, 402
BlsI	GCNGC	3 cut(s)	25, 28, 403
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	405
BmgBI	CACGTC	3 cut(s)	139, 211, 307
BmgT120I	GGNCC	3 cut(s)	154, 249, 355
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	87
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	91
Bpu14I	TTCGAA	2 cut(s)	231, 500
BpuEI	CTTGAG	1 cut(s)	766
BsaAI	YACGTR	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 783
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	198, 321
BseLI	CCNNNNNNNGG	2 cut(s)	664, 783
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	10, 13
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	3 cut(s)	156, 251, 341
BshTI	ACCGGT	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	424, 546
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	664, 783
BsmAI	GTCTC	2 cut(s)	165, 587
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	156, 251, 341
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	2 cut(s)	231, 500
Bsp1286I	GDGCHC	3 cut(s)	424, 522, 546
Bsp143I	GATC	4 cut(s)	57, 129, 390, 462
BspACI	CCGC	3 cut(s)	93, 401, 680
BspANI	GGCC	3 cut(s)	156, 251, 341
BspFNI	CGCG	1 cut(s)	479
BspMI	ACCTGC	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	398
BspT104I	TTCGAA	2 cut(s)	231, 500
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	4 cut(s)	57, 129, 390, 462
BssNI	GRCGYC	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	563
BstBI	TTCGAA	2 cut(s)	231, 500
BstC8I	GCNNGC	3 cut(s)	399, 451, 486
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	198, 321
BstFNI	CGCG	1 cut(s)	479
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	119, 479
BstKTI	GATC	4 cut(s)	60, 132, 393, 465
BstMAI	GTCTC	2 cut(s)	165, 587
BstMBI	GATC	4 cut(s)	57, 129, 390, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 485
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	2 cut(s)	401, 488
BstSCI	CCNGG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	2 cut(s)	10, 13
BstV2I	GAAGAC	1 cut(s)	373
BsuRI	GGCC	3 cut(s)	156, 251, 341
BtrI	CACGTC	3 cut(s)	139, 211, 307
BtsCI	GGATG	2 cut(s)	198, 321
BtsI	GCAGTG	2 cut(s)	60, 675
BtsIMutI	CAGTG	3 cut(s)	60, 79, 675
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	3 cut(s)	399, 451, 486
CaiI	CAGNNNCTG	1 cut(s)	698
CfoI	GCGC	2 cut(s)	119, 479
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	3 cut(s)	154, 249, 355
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	490, 553
CspAI	ACCGGT	1 cut(s)	62
CviAII	CATG	4 cut(s)	398, 485, 493, 506
CviQI	GTAC	2 cut(s)	490, 553
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	4 cut(s)	59, 131, 392, 464
DpnII	GATC	4 cut(s)	57, 129, 390, 462
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	695
Ecl136II	GAGCTC	2 cut(s)	422, 544
Eco24I	GRGCYC	3 cut(s)	424, 522, 546
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	2 cut(s)	422, 544
Eco88I	CYCGRG	1 cut(s)	405
EcoICRI	GAGCTC	2 cut(s)	422, 544
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	3 cut(s)	424, 522, 546
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	4 cut(s)	401, 488, 496, 509
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	397, 484, 492, 505
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	24, 27, 402
FokI	GGATG	2 cut(s)	185, 308
FriOI	GRGCYC	3 cut(s)	424, 522, 546
Fsp4HI	GCNGC	3 cut(s)	24, 27, 402
FspBI	CTAG	2 cut(s)	272, 450
GlaI	GCGC	2 cut(s)	118, 478
GluI	GCNGC	3 cut(s)	24, 27, 402
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	156, 251, 341
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	2 cut(s)	119, 479
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	401, 488, 496, 509
Hin6I	GCGC	2 cut(s)	117, 477
HinP1I	GCGC	2 cut(s)	117, 477
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	5 cut(s)	86, 99, 297, 510, 722
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	3 cut(s)	52, 77, 247
Hpy166II	GTNNAC	3 cut(s)	244, 313, 367
Hpy188I	TCNGA	3 cut(s)	83, 362, 548
Hpy188III	TCNNGA	3 cut(s)	108, 127, 523
Hpy8I	GTNNAC	3 cut(s)	244, 313, 367
Hpy99I	CGWCG	3 cut(s)	308, 484, 601
HpyAV	CCTTC	6 cut(s)	27, 35, 192, 205, 626, 670
HpyCH4IV	ACGT	5 cut(s)	138, 210, 306, 562, 596
HpyCH4V	TGCA	3 cut(s)	29, 142, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 485
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	5 cut(s)	138, 210, 306, 562, 596
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	4 cut(s)	401, 488, 496, 509
HspAI	GCGC	2 cut(s)	117, 477
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	57, 129, 390, 462
LmnI	GCTCC	2 cut(s)	419, 541
LpnPI	CCDG	9 cut(s)	76, 85, 109, 121, 232, 279, 338, 431, 458
Lsp1109I	GCAGC	2 cut(s)	10, 13
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	272, 450
MaeII	ACGT	5 cut(s)	138, 210, 306, 562, 596
MaeIII	GTNAC	3 cut(s)	12, 206, 211
MalI	GATC	4 cut(s)	59, 131, 392, 464
MboI	GATC	4 cut(s)	57, 129, 390, 462
MboII	GAAGA	4 cut(s)	94, 373, 538, 695
MhlI	GDGCHC	3 cut(s)	424, 522, 546
MluCI	AATT	3 cut(s)	568, 611, 745
MlyI	GAGTC	3 cut(s)	93, 519, 731
MmeI	TCCRAC	2 cut(s)	519, 678
MnlI	CCTC	7 cut(s)	331, 335, 368, 508, 668, 688, 755
MseI	TTAA	2 cut(s)	618, 808
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	2 cut(s)	407, 485
NdeII	GATC	4 cut(s)	57, 129, 390, 462
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	4 cut(s)	401, 488, 496, 509
NmuCI	GTSAC	2 cut(s)	206, 211
NspI	RCATGY	2 cut(s)	401, 488
NspV	TTCGAA	2 cut(s)	231, 500
PaeI	GCATGC	2 cut(s)	401, 488
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	86, 297
PflFI	GACNNNGTC	1 cut(s)	308
PinAI	ACCGGT	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	25, 28, 403
PleI	GAGTC	3 cut(s)	93, 518, 730
PpsI	GAGTC	3 cut(s)	93, 518, 730
Ppu21I	YACGTR	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	2 cut(s)	424, 546
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspPI	GGNCC	3 cut(s)	154, 249, 355
PspPPI	RGGWCCY	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	698
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	491, 554
RsaNI	GTAC	2 cut(s)	490, 553
SacI	GAGCTC	2 cut(s)	424, 546
SaqAI	TTAA	2 cut(s)	618, 808
SatI	GCNGC	3 cut(s)	24, 27, 402
Sau3AI	GATC	4 cut(s)	57, 129, 390, 462
Sau96I	GGNCC	3 cut(s)	154, 249, 355
SchI	GAGTC	3 cut(s)	93, 519, 731
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	3 cut(s)	424, 522, 546
SfaNI	GCATC	1 cut(s)	87
SfuI	TTCGAA	2 cut(s)	231, 500
SgrAI	CRCCGGYG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SphI	GCATGC	2 cut(s)	401, 488
Sse9I	AATT	3 cut(s)	568, 611, 745
SsiI	CCGC	3 cut(s)	93, 401, 680
SspMI	CTAG	2 cut(s)	272, 450
SstI	GAGCTC	2 cut(s)	424, 546
StyD4I	CCNGG	1 cut(s)	444
TaiI	ACGT	5 cut(s)	141, 213, 309, 565, 599
TaqI	TCGA	8 cut(s)	231, 327, 348, 424, 461, 500, 513, 624
TasI	AATT	3 cut(s)	568, 611, 745
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	86, 297
Tru1I	TTAA	2 cut(s)	618, 808
Tru9I	TTAA	2 cut(s)	618, 808
TscAI	CASTG	3 cut(s)	60, 79, 675
TseFI	GTSAC	2 cut(s)	206, 211
TseI	GCWGC	2 cut(s)	23, 26
Tsp45I	GTSAC	2 cut(s)	206, 211
TspDTI	ATGAA	3 cut(s)	187, 234, 645
TspGWI	ACGGA	2 cut(s)	151, 570
TspRI	CASTG	3 cut(s)	60, 79, 675
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	2 cut(s)	401, 488
XspI	CTAG	2 cut(s)	272, 450
ZraI	GACGTC	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.