Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

15850588 .. 15852022

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATTTGGCATCAAAGTTTGTTCTGCCGGATTCTCGAGGTTACTGCTGATGATTGCTACTGGAAATATGCTACATTACATGCTTACAACCCACATGAGGAGTATGAAGATGTGGAATCCACATTGTGTTCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATATGATTTGCACCAAGGAAATACATCCCTGGACACACATGATGGAGGTACCCCAGCTCCATGGGTTTGGGCCTGCAGCCAATCGCTTATTGGAGGCATATAAGATGCTTTTGAAGGTATCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

98

Amino Acids

11.58

Weight (kDa)

5.53

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	23 - 96	1.1e-36	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	169, 283
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	144
Asp718I	GGTACC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	19, 264
BsaJI	CCNNGG	3 cut(s)	183, 197, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	183, 197, 229
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	183, 197, 229
BssMI	GATC	1 cut(s)	161
BssT1I	CCWWGG	2 cut(s)	183, 229
Bst2UI	CCWGG	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	257
BstXI	CCANNNNNNTGG	2 cut(s)	230, 236
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	4 cut(s)	80, 95, 208, 230
CviJI	RGCY	3 cut(s)	226, 241, 248
CviKI_1	RGCY	3 cut(s)	226, 241, 248
CviQI	GTAC	1 cut(s)	218
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
DraIII	CACNNNGTG	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	183, 229
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	183, 229
ErhI	CCWWGG	2 cut(s)	183, 229
FaeI	CATG	4 cut(s)	83, 98, 211, 233
FaiI	YATR	9 cut(s)	69, 81, 96, 105, 173, 209, 231, 268, 270
FatI	CATG	4 cut(s)	79, 94, 207, 229
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	4 cut(s)	83, 98, 211, 233
HinfI	GANTC	3 cut(s)	31, 116, 140
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	35, 149
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	158, 180, 245
Hsp92II	CATG	4 cut(s)	83, 98, 211, 233
KpnI	GGTACC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	41, 46, 184, 211, 236, 255
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	19, 264
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	119
MnlI	CCTC	4 cut(s)	31, 91, 208, 256
MroXI	GAANNNNTTC	1 cut(s)	144
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	83, 98, 211, 233
NlaIV	GGNNCC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	31, 116, 140
PkrI	GCNGC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	4 cut(s)	42, 219, 228, 288
SfaNI	GCATC	2 cut(s)	19, 264
SfcI	CTRYAG	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	2 cut(s)	183, 229
TaqI	TCGA	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	31, 116, 140
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	120
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.