Rh2AG558000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000643
Physical Location & Seq
Forward (+)
78893426 .. 78894742
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG558000.1

Sequence Viewer

Length: 1317 bp
ATGAGTGTTCTTGAATACCCAGATGCCATTAACGCCCCGGAGCTTCAGGTCTGGAACAACGCCGCCTTCGACGACAATGAGGGCTCTGAGTTCTCCGGCGCCACCGTTAAAGCTTTCTGGTCTTCCGAATCCGATTGCAGCAAAGAGAATCTGAGCCCGGTTCCGAAAACCCCTGTTTTCGCGGCGTCTTCGGTGCCGTTTAAGCCGCTGAACGGAAATTCGCGGCGGTTGTCTGTGGCGCCGAAGAAGATGGGGTTTGAGGTTGAAGAAGAGAAAGGTCGAGACTTGGGGAAGATCGATTCGGAGATTGAGGAAATCGAGAAGGAGATAGGCCGATTGAATTCGAGGCTGGAGTTACTGAAACTCGAGAAGGCCGAGAAGGCGGCGGAGAAGCGCGGCAGGGTTGTGGCGGCGAAGTTCATGGAGCTGCCGAAGCAGAGCGTGAAGAATTCCGATGGGTTGAGAAAGATTGAGGAGTCTTTGAATTTGAGCGCCAGGCCGAAGGTTAATCGGAGAGGTATGAGTTTGGGGCCGTCGGAGATTATCGCCGGAGCCGGGTTCCGGCGGCCGAGTAAGCTTGAGATAACCCCTGTTCAGAAAATACAGGATCGCCGGAAATCTTGCTTCTGGAAGCTTCAGGACATTGATGAACTGAGGGTTACTAAAGAGAGGGGTAAAAGCACGAGTCTCAGCCCGAAATCGAGGAAGACTGCGTCCAAAATCGGAGCTCCGAAACAGGCTGCAACTTCAATCGGGGGTTCTAAGAGGCCGGTGAAGAAGGAAGACAAGGTTCTTGGTTCAATTGAGCCCAAGAAGCTTTTCAAAGAAGGGGAGAAGTCTGTGCCTAACAAGAAGCCAGTCAAGGCTGGGAGGGTGGTGGCAAGCAGATACAATCAGATCGGTACTTCTTCGGCTGCTGCGGCGGATGGCCGGAAAAGGTCTTTGCCGGATGATGATAAGGAAGATGGGAGCCGGTGTGAGAAGAAGCGCGTGTCATTGGTGGGGAAGCCACGTGGCATTGGGAGGGAGGGGTCTAGGAGCGTTGGACCGGAGAGTAGGATGAAGAAGAGGTGGGAGATTCCTAGTGAGGTGGTGGTGTTCCAGGGTGTGGAGGAGGATGGTGTTGCTCAAATGGGTGATGTGAGTGATGTGCTGCCTAAGATTAGGACCGCTCGATGTGTCAATGACACGCCGAGGGGGTCAGGGCCGGCGAAAAGAGTGGCGGAATTGGTTGGGATGAAGAAGTATTTTAGCAACAGTGATGAGTTCTGCCAGGAATTGAGTTTTGCAGAGGAGGAGGATGGTGAAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

48.24

Weight (kDa)

9.39

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 98, 193, 238
AccB7I CCANNNNNTGG 1 cut(s) 1108
AccBSI CCGCTC 1 cut(s) 1172
AccII CGCG 4 cut(s) 182, 223, 396, 990
AclWI GGATC 1 cut(s) 615
AcoI YGGCCR 2 cut(s) 566, 928
AcsI RAATTY 4 cut(s) 217, 340, 448, 484
AcuI CTGAAG 2 cut(s) 29, 620
AcvI CACGTG 1 cut(s) 1013
AcyI GRCGYC 3 cut(s) 99, 185, 239
AfaI GTAC 1 cut(s) 904
AfiI CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
AgsI TTSAA 7 cut(s) 14, 266, 340, 484, 750, 801, 823
AjnI CCWGG 3 cut(s) 494, 1101, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AluBI AGCT 7 cut(s) 43, 113, 427, 577, 634, 728, 817
AluI AGCT 7 cut(s) 43, 113, 427, 577, 634, 728, 817
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 2 cut(s) 276, 692
AlwI GGATC 1 cut(s) 615
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 8 cut(s) 331, 372, 497, 530, 566, 767, 928, 1205
ApeKI GCWGC 6 cut(s) 138, 427, 740, 914, 917, 1153
ApoI RAATTY 4 cut(s) 217, 340, 448, 484
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 5 cut(s) 101, 241, 396, 494, 990
AspS9I GGNCC 4 cut(s) 530, 1046, 1167, 1205
AsuC2I CCSGG 3 cut(s) 38, 158, 556
AsuHPI GGTGA 3 cut(s) 784, 1148, 1316
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 2 cut(s) 1046, 1167
BanI GGYRCC 3 cut(s) 98, 193, 238
BanII GRGCYC 4 cut(s) 86, 158, 730, 810
BauI CACGAG 1 cut(s) 682
BbrPI CACGTG 1 cut(s) 1013
BbsI GAAGAC 4 cut(s) 114, 180, 713, 789
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 6 cut(s) 150, 414, 727, 901, 904, 1140
BccI CCATC 6 cut(s) 244, 449, 920, 959, 1112, 1295
BceAI ACGGC 2 cut(s) 181, 517
BciT130I CCWGG 3 cut(s) 496, 1103, 1274
BcnI CCSGG 3 cut(s) 38, 158, 556
BcoDI GTCTC 2 cut(s) 276, 692
BfaI CTAG 2 cut(s) 1035, 1083
BfoI RGCGCY 3 cut(s) 102, 242, 495
BglI GCCNNNNNGGC 1 cut(s) 380
Bme1390I CCNGG 6 cut(s) 38, 158, 496, 556, 1103, 1274
Bme18I GGWCC 2 cut(s) 1046, 1167
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 4 cut(s) 530, 1046, 1167, 1205
BmiI GGNNCC 8 cut(s) 100, 162, 195, 240, 531, 553, 560, 971
BmrFI CCNGG 6 cut(s) 38, 158, 496, 556, 1103, 1274
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 4 cut(s) 114, 180, 713, 789
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 3 cut(s) 38, 158, 556
Bsa29I ATCGAT 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 1013
BsaHI GRCGYC 3 cut(s) 99, 185, 239
BsaJI CCNNGG 3 cut(s) 36, 1102, 1193
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
Bse118I RCCGGY 3 cut(s) 769, 972, 1207
Bse1I ACTGG 1 cut(s) 857
BseBI CCWGG 3 cut(s) 496, 1103, 1274
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 36, 1102, 1193
BseGI GGATG 6 cut(s) 931, 955, 1065, 1123, 1242, 1306
BseLI CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
BseMII CTCAG 4 cut(s) 78, 143, 644, 703
BseNI ACTGG 1 cut(s) 857
BseRI GAGGAG 4 cut(s) 488, 1127, 1307, 1310
BseX3I CGGCCG 1 cut(s) 566
BseXI GCAGC 6 cut(s) 150, 414, 727, 901, 904, 1140
BseYI CCCAGC 1 cut(s) 866
Bsh1236I CGCG 4 cut(s) 182, 223, 396, 990
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1207
BshNI GGYRCC 3 cut(s) 98, 193, 238
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 365
BslI CCNNNNNNNGG 4 cut(s) 212, 555, 561, 1108
BsmAI GTCTC 2 cut(s) 276, 692
BsnI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1207
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 86, 158, 730, 810
Bsp143I GATC 3 cut(s) 294, 607, 897
BspANI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1207
BspCNI CTCAG 4 cut(s) 79, 144, 645, 702
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 4 cut(s) 182, 223, 396, 990
BspLI GGNNCC 8 cut(s) 100, 162, 195, 240, 531, 553, 560, 971
BspPI GGATC 1 cut(s) 615
BspT107I GGYRCC 3 cut(s) 98, 193, 238
BsrBI CCGCTC 1 cut(s) 1172
BsrFI RCCGGY 3 cut(s) 769, 972, 1207
BsrI ACTGG 1 cut(s) 857
BssAI RCCGGY 3 cut(s) 769, 972, 1207
BssECI CCNNGG 3 cut(s) 36, 1102, 1193
BssMI GATC 3 cut(s) 294, 607, 897
BssNI GRCGYC 3 cut(s) 99, 185, 239
BssSI CACGAG 1 cut(s) 682
Bst2BI CACGAG 1 cut(s) 682
Bst2UI CCWGG 3 cut(s) 496, 1103, 1274
Bst4CI ACNGT 2 cut(s) 106, 1259
Bst6I CTCTTC 2 cut(s) 264, 1061
BstACI GRCGYC 3 cut(s) 99, 185, 239
BstBAI YACGTR 1 cut(s) 1013
BstC8I GCNNGC 2 cut(s) 883, 1209
BstDEI CTNAG 6 cut(s) 87, 152, 653, 689, 762, 1158
BstF5I GGATG 6 cut(s) 931, 955, 1065, 1123, 1242, 1306
BstFNI CGCG 4 cut(s) 182, 223, 396, 990
BstH2I RGCGCY 3 cut(s) 102, 242, 495
BstHHI GCGC 5 cut(s) 101, 241, 396, 494, 990
BstKTI GATC 3 cut(s) 297, 610, 900
BstMAI GTCTC 2 cut(s) 276, 692
BstMBI GATC 3 cut(s) 294, 607, 897
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 7 cut(s) 32, 202, 380, 433, 574, 814, 920
BstNI CCWGG 3 cut(s) 496, 1103, 1274
BstSCI CCNGG 6 cut(s) 36, 156, 494, 554, 1101, 1272
BstUI CGCG 4 cut(s) 182, 223, 396, 990
BstV1I GCAGC 6 cut(s) 150, 414, 727, 901, 904, 1140
BstV2I GAAGAC 4 cut(s) 114, 180, 713, 789
BstZI CGGCCG 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1207
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 6 cut(s) 931, 955, 1065, 1123, 1242, 1306
BtsIMutI CAGTG 1 cut(s) 1264
Cac8I GCNNGC 2 cut(s) 883, 1209
CfoI GCGC 5 cut(s) 101, 241, 396, 494, 990
Cfr10I RCCGGY 3 cut(s) 769, 972, 1207
Cfr13I GGNCC 4 cut(s) 530, 1046, 1167, 1205
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 2 cut(s) 174, 702
Csp6I GTAC 1 cut(s) 903
CviAII CATG 1 cut(s) 421
CviQI GTAC 1 cut(s) 903
DdeI CTNAG 6 cut(s) 87, 152, 653, 689, 762, 1158
DinI GGCGCC 2 cut(s) 100, 240
DpnI GATC 3 cut(s) 296, 609, 899
DpnII GATC 3 cut(s) 294, 607, 897
EaeI YGGCCR 2 cut(s) 566, 928
EagI CGGCCG 1 cut(s) 566
Eam1104I CTCTTC 2 cut(s) 264, 1061
EarI CTCTTC 2 cut(s) 264, 1061
EciI GGCGGA 3 cut(s) 401, 938, 1238
Ecl136II GAGCTC 1 cut(s) 728
EclXI CGGCCG 1 cut(s) 566
Eco24I GRGCYC 4 cut(s) 86, 158, 730, 810
Eco47I GGWCC 2 cut(s) 1046, 1167
Eco52I CGGCCG 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 728
Eco57I CTGAAG 2 cut(s) 29, 620
Eco72I CACGTG 1 cut(s) 1013
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 728
EcoRI GAATTC 2 cut(s) 340, 448
EcoRII CCWGG 3 cut(s) 494, 1101, 1272
EcoT38I GRGCYC 4 cut(s) 86, 158, 730, 810
EgeI GGCGCC 2 cut(s) 100, 240
EheI GGCGCC 2 cut(s) 100, 240
FaeI CATG 1 cut(s) 424
FaiI YATR 2 cut(s) 422, 521
FatI CATG 1 cut(s) 420
FokI GGATG 6 cut(s) 938, 962, 1072, 1130, 1249, 1313
FriOI GRGCYC 4 cut(s) 86, 158, 730, 810
FspBI CTAG 2 cut(s) 1035, 1083
GlaI GCGC 5 cut(s) 100, 240, 395, 493, 989
GsaI CCCAGC 1 cut(s) 870
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 3 cut(s) 102, 242, 495
HaeIII GGCC 8 cut(s) 333, 374, 499, 532, 568, 769, 930, 1207
HgaI GACGC 2 cut(s) 174, 702
HhaI GCGC 5 cut(s) 101, 241, 396, 494, 990
Hin1I GRCGYC 3 cut(s) 99, 185, 239
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 5 cut(s) 99, 239, 394, 492, 988
HinP1I GCGC 5 cut(s) 99, 239, 394, 492, 988
HindIII AAGCTT 4 cut(s) 111, 575, 632, 815
HinfI GANTC 6 cut(s) 128, 148, 299, 476, 685, 1078
HphI GGTGA 3 cut(s) 784, 1148, 1316
Hpy188III TCNNGA 7 cut(s) 11, 52, 281, 319, 367, 628, 638
Hpy99I CGWCG 2 cut(s) 74, 538
HpyAV CCTTC 7 cut(s) 76, 316, 364, 373, 496, 772, 821
HpyCH4III ACNGT 2 cut(s) 106, 1259
HpyCH4IV ACGT 1 cut(s) 1012
HpyCH4V TGCA 3 cut(s) 138, 743, 1289
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 202, 380, 433, 574, 814, 920
HpyF3I CTNAG 6 cut(s) 87, 152, 653, 689, 762, 1158
HpySE526I ACGT 1 cut(s) 1012
Hsp92I GRCGYC 3 cut(s) 99, 185, 239
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 5 cut(s) 99, 239, 394, 492, 988
KasI GGCGCC 2 cut(s) 98, 238
KroI GCCGGC 1 cut(s) 1207
KroNI GCCGGC 1 cut(s) 1209
Kzo9I GATC 3 cut(s) 294, 607, 897
LmnI GCTCC 7 cut(s) 40, 424, 551, 725, 733, 969, 1038
Lsp1109I GCAGC 6 cut(s) 150, 414, 727, 901, 904, 1140
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 1035, 1083
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 2 cut(s) 354, 658
MalI GATC 3 cut(s) 296, 609, 899
MbiI CCGCTC 1 cut(s) 1172
MboI GATC 3 cut(s) 294, 607, 897
MfeI CAATTG 1 cut(s) 801
MhlI GDGCHC 4 cut(s) 86, 158, 730, 810
MluCI AATT 7 cut(s) 217, 340, 448, 484, 801, 1226, 1277
Mly113I GGCGCC 2 cut(s) 99, 239
MlyI GAGTC 2 cut(s) 485, 694
MmeI TCCRAC 2 cut(s) 516, 1024
MroNI GCCGGC 1 cut(s) 1207
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 4 cut(s) 30, 108, 201, 507
MspA1I CMGCKG 1 cut(s) 208
MspR9I CCNGG 6 cut(s) 38, 158, 496, 556, 1103, 1274
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 3 cut(s) 496, 1103, 1274
MvnI CGCG 4 cut(s) 182, 223, 396, 990
MwoI GCNNNNNNNGC 7 cut(s) 32, 202, 380, 433, 574, 814, 920
NaeI GCCGGC 1 cut(s) 1209
NarI GGCGCC 2 cut(s) 99, 239
NciI CCSGG 3 cut(s) 38, 158, 556
NdeII GATC 3 cut(s) 294, 607, 897
NgoMIV GCCGGC 1 cut(s) 1207
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 8 cut(s) 100, 162, 195, 240, 531, 553, 560, 971
NmeAIII GCCGAG 3 cut(s) 400, 594, 1218
PaeR7I CTCGAG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 372
PdiI GCCGGC 1 cut(s) 1209
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 4 cut(s) 128, 148, 299, 1078
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 1108
PleI GAGTC 2 cut(s) 484, 693
PluTI GGCGCC 2 cut(s) 102, 242
PmaCI CACGTG 1 cut(s) 1013
PmlI CACGTG 1 cut(s) 1013
PpsI GAGTC 2 cut(s) 484, 693
Ppu21I YACGTR 1 cut(s) 1013
Psp124BI GAGCTC 1 cut(s) 730
Psp6I CCWGG 3 cut(s) 494, 1101, 1272
PspCI CACGTG 1 cut(s) 1013
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 3 cut(s) 494, 1101, 1272
PspN4I GGNNCC 8 cut(s) 100, 162, 195, 240, 531, 553, 560, 971
PspPI GGNCC 4 cut(s) 530, 1046, 1167, 1205
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 1 cut(s) 904
RsaNI GTAC 1 cut(s) 903
SacI GAGCTC 1 cut(s) 730
SaqAI TTAA 4 cut(s) 30, 108, 201, 507
Sau3AI GATC 3 cut(s) 294, 607, 897
Sau96I GGNCC 4 cut(s) 530, 1046, 1167, 1205
SchI GAGTC 2 cut(s) 485, 694
ScrFI CCNGG 6 cut(s) 38, 158, 496, 556, 1103, 1274
SduI GDGCHC 4 cut(s) 86, 158, 730, 810
SfaNI GCATC 1 cut(s) 13
SfoI GGCGCC 2 cut(s) 100, 240
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 2 cut(s) 1046, 1167
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 365, 578
SmoI CTYRAG 2 cut(s) 365, 578
Sse9I AATT 7 cut(s) 217, 340, 448, 484, 801, 1226, 1277
SspDI GGCGCC 2 cut(s) 98, 238
SspMI CTAG 2 cut(s) 1035, 1083
SstI GAGCTC 1 cut(s) 730
StyD4I CCNGG 6 cut(s) 36, 156, 494, 554, 1101, 1272
TaaI ACNGT 2 cut(s) 106, 1259
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 8 cut(s) 69, 280, 297, 318, 344, 366, 701, 1174
TasI AATT 7 cut(s) 217, 340, 448, 484, 801, 1226, 1277
TauI GCSGC 9 cut(s) 65, 185, 208, 226, 386, 399, 413, 568, 923
TfiI GAWTC 4 cut(s) 128, 148, 299, 1078
Tru1I TTAA 4 cut(s) 30, 108, 201, 507
Tru9I TTAA 4 cut(s) 30, 108, 201, 507
TscAI CASTG 1 cut(s) 1264
TseI GCWGC 6 cut(s) 138, 427, 740, 914, 917, 1153
TspDTI ATGAA 4 cut(s) 409, 663, 1076, 1253
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 1264
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 1108
VpaK11BI GGWCC 2 cut(s) 1046, 1167
XapI RAATTY 4 cut(s) 217, 340, 448, 484
XhoI CTCGAG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 2 cut(s) 1035, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.