Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Forward (+)

214457 .. 220478

Gene Structure 6022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000173.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcagcgaggcaaatggaagagatacagcggaagctggcgactttgaactacccaagagccaatgcgcctgctcagtctctcctcttcgccggcatggagcgctatgctcttctcgagtggctcttcttccgattgctgggggacaagtcacctttctcccaacaaagtcttcaaggggacgccatggatcgcgacgaagaaactgcccgcattcaatgtaaggtttcttcttgtagaatctcgaataccgggcatgatgtttctgagctggagcaaaagcttacagaacaatcaaagatactctcaagtcttcaacaaaaggttgatgatttggcatcaaagcatgcttacaacccagatgaggagtatgcagaggtagaatccagattgcgttcacatttggaatcttttctagaaactgcaagatcattcaatatgatttacaccaaggaaatacgtccctggacacacatgatggaggtaccccagctccatgggttcgggccagctgccaatcgcttgttggaggcatataagatgcttttgaagttcctagggaacttgaggaatcttagagactcacatgctgctcttgccgtcggatcatctgactcagttgctggtgagccctcttctgtcacaagaataatctcagaatgtgaatctgcgttgacattcttaaatcgtgaccttggaattctctcggcttccattgctcgagagcaaggtgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

245

Amino Acids

27.61

Weight (kDa)

5.62

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AccII	CGCG	1 cut(s)	195
AciI	CCGC	2 cut(s)	31, 211
AclWI	GGATC	2 cut(s)	198, 613
AcsI	RAATTY	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	486
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	139, 364
AgsI	TTSAA	6 cut(s)	49, 176, 218, 317, 436, 550
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	5 cut(s)	37, 271, 283, 493, 512
AluI	AGCT	5 cut(s)	37, 271, 283, 493, 512
Alw26I	GTCTC	2 cut(s)	84, 573
AlwI	GGATC	2 cut(s)	198, 613
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	2 cut(s)	116, 720
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	3 cut(s)	5, 512, 590
ApoI	RAATTY	1 cut(s)	699
Asp700I	GAANNNNTTC	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	484
AspA2I	CCTAGG	1 cut(s)	556
AspLEI	GCGC	2 cut(s)	70, 105
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	144, 638
AvaI	CYCGRG	2 cut(s)	116, 720
AvrII	CCTAGG	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbsI	GAAGAC	2 cut(s)	164, 305
BbvI	GCAGC	3 cut(s)	17, 499, 577
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	84, 573
BfaI	CTAG	2 cut(s)	416, 557
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	3 cut(s)	6, 513, 591
BlnI	CCTAGG	1 cut(s)	556
BlsI	GCNGC	3 cut(s)	7, 514, 592
Bme1390I	CCNGG	2 cut(s)	253, 466
BmeT110I	CYCGRG	2 cut(s)	116, 720
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	253, 466
BmsI	GCATC	2 cut(s)	347, 531
BpiI	GAAGAC	2 cut(s)	164, 305
BpmI	CTGGAG	1 cut(s)	293
BpuEI	CTTGAG	2 cut(s)	292, 586
BpuMI	CCSGG	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	6 cut(s)	186, 450, 464, 496, 556, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 364
Bse118I	RCCGGY	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	6 cut(s)	186, 450, 464, 496, 556, 694
BseLI	CCNNNNNNNGG	2 cut(s)	139, 364
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	4 cut(s)	89, 258, 630, 669
BseRI	GAGGAG	2 cut(s)	74, 380
BseXI	GCAGC	3 cut(s)	17, 499, 577
BseYI	CCCAGC	2 cut(s)	139, 489
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	1 cut(s)	484
BsiHKCI	CYCGRG	2 cut(s)	116, 720
BsiSI	CCGG	2 cut(s)	93, 252
BslFI	GGGAC	3 cut(s)	158, 194, 447
BslI	CCNNNNNNNGG	2 cut(s)	139, 364
BsmAI	GTCTC	2 cut(s)	84, 573
BsmFI	GGGAC	3 cut(s)	158, 194, 447
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	508
BsoBI	CYCGRG	2 cut(s)	116, 720
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	190, 428, 605
Bsp19I	CCATGG	2 cut(s)	186, 496
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	2 cut(s)	31, 211
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	4 cut(s)	88, 259, 629, 668
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	198, 613
BspQI	GCTCTTC	2 cut(s)	117, 131
BspT107I	GGYRCC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	6 cut(s)	186, 450, 464, 496, 556, 694
BssMI	GATC	3 cut(s)	190, 428, 605
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	5 cut(s)	186, 450, 496, 556, 694
Bst2UI	CCWGG	1 cut(s)	466
Bst6I	CTCTTC	5 cut(s)	15, 92, 117, 131, 640
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	6 cut(s)	39, 72, 94, 211, 348, 510
BstDEI	CTNAG	5 cut(s)	75, 267, 575, 616, 655
BstDSI	CCRYGG	2 cut(s)	186, 496
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	70, 105
BstKTI	GATC	3 cut(s)	193, 431, 608
BstMAI	GTCTC	2 cut(s)	84, 573
BstMBI	GATC	3 cut(s)	190, 428, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 596, 716
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	350, 590
BstSCI	CCNGG	2 cut(s)	251, 464
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	17, 499, 577
BstV2I	GAAGAC	2 cut(s)	164, 305
BstXI	CCANNNNNNTGG	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	508
BtgI	CCRYGG	2 cut(s)	186, 496
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	6 cut(s)	39, 72, 94, 211, 348, 510
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	70, 105
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	7 cut(s)	97, 187, 257, 347, 475, 497, 587
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	5 cut(s)	75, 267, 575, 616, 655
DpnI	GATC	3 cut(s)	192, 430, 607
DpnII	GATC	3 cut(s)	190, 428, 605
Eam1104I	CTCTTC	5 cut(s)	15, 92, 117, 131, 640
EarI	CTCTTC	5 cut(s)	15, 92, 117, 131, 640
Eco130I	CCWWGG	5 cut(s)	186, 450, 496, 556, 694
Eco24I	GRGCYC	1 cut(s)	633
Eco47III	AGCGCT	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	116, 720
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	5 cut(s)	186, 450, 496, 556, 694
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	5 cut(s)	186, 450, 496, 556, 694
FaeI	CATG	7 cut(s)	100, 190, 260, 350, 478, 500, 590
FaqI	GGGAC	3 cut(s)	158, 194, 447
FatI	CATG	7 cut(s)	96, 186, 256, 346, 474, 496, 586
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	6, 513, 591
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	3 cut(s)	6, 513, 591
FspBI	CTAG	2 cut(s)	416, 557
GlaI	GCGC	2 cut(s)	69, 104
GluI	GCNGC	3 cut(s)	6, 513, 591
GsaI	CCCAGC	2 cut(s)	143, 493
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	93, 252
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	70, 105
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	100, 190, 260, 350, 478, 500, 590
Hin6I	GCGC	2 cut(s)	68, 103
HinP1I	GCGC	2 cut(s)	68, 103
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	7 cut(s)	240, 383, 407, 571, 581, 614, 665
HpaII	CCGG	2 cut(s)	93, 252
HphI	GGTGA	2 cut(s)	144, 638
Hpy166II	GTNNAC	2 cut(s)	398, 675
Hpy188I	TCNGA	5 cut(s)	134, 268, 605, 613, 658
Hpy188III	TCNNGA	7 cut(s)	116, 194, 244, 387, 416, 689, 722
Hpy8I	GTNNAC	2 cut(s)	398, 675
Hpy99I	CGWCG	2 cut(s)	200, 605
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	374, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 596, 716
HpyF3I	CTNAG	5 cut(s)	75, 267, 575, 616, 655
HpySE526I	ACGT	1 cut(s)	460
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	100, 190, 260, 350, 478, 500, 590
HspAI	GCGC	2 cut(s)	68, 103
KpnI	GGTACC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	190, 428, 605
LguI	GCTCTTC	2 cut(s)	117, 131
LmnI	GCTCC	3 cut(s)	100, 274, 498
Lsp1109I	GCAGC	3 cut(s)	17, 499, 577
LweI	GCATC	2 cut(s)	347, 531
MaeI	CTAG	2 cut(s)	416, 557
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	150, 640, 689
MalI	GATC	3 cut(s)	192, 430, 607
MboI	GATC	3 cut(s)	190, 428, 605
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	1 cut(s)	699
MlyI	GAGTC	2 cut(s)	575, 608
MmeI	TCCRAC	2 cut(s)	507, 583
MnlI	CCTC	8 cut(s)	3, 95, 358, 370, 475, 523, 561, 643
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	683
MspA1I	CMGCKG	2 cut(s)	31, 512
MspI	CCGG	2 cut(s)	93, 252
MspR9I	CCNGG	2 cut(s)	253, 466
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	102, 596, 716
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	2 cut(s)	186, 496
NdeII	GATC	3 cut(s)	190, 428, 605
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	7 cut(s)	100, 190, 260, 350, 478, 500, 590
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	3 cut(s)	150, 640, 689
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	2 cut(s)	350, 590
PaeI	GCATGC	1 cut(s)	350
PaeR7I	CTCGAG	2 cut(s)	116, 720
PciSI	GCTCTTC	2 cut(s)	117, 131
PctI	GAATGC	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	240, 383, 407, 571, 665
PkrI	GCNGC	3 cut(s)	7, 514, 592
PleI	GAGTC	2 cut(s)	575, 608
PpsI	GAGTC	2 cut(s)	575, 608
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	2 cut(s)	139, 489
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	512
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SapI	GCTCTTC	2 cut(s)	117, 131
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	3 cut(s)	6, 513, 591
Sau3AI	GATC	3 cut(s)	190, 428, 605
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	575, 608
ScrFI	CCNGG	2 cut(s)	253, 466
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	2 cut(s)	347, 531
Sfr274I	CTCGAG	2 cut(s)	116, 720
SlaI	CTCGAG	2 cut(s)	116, 720
SmlI	CTYRAG	4 cut(s)	116, 307, 565, 720
SmoI	CTYRAG	4 cut(s)	116, 307, 565, 720
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	1 cut(s)	699
SsiI	CCGC	2 cut(s)	31, 211
SspMI	CTAG	2 cut(s)	416, 557
StyD4I	CCNGG	2 cut(s)	251, 464
StyI	CCWWGG	5 cut(s)	186, 450, 496, 556, 694
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	3 cut(s)	117, 245, 721
TasI	AATT	1 cut(s)	699
TfiI	GAWTC	5 cut(s)	240, 383, 407, 571, 665
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TseFI	GTSAC	3 cut(s)	150, 640, 689
TseI	GCWGC	3 cut(s)	5, 512, 590
Tsp45I	GTSAC	3 cut(s)	150, 640, 689
XapI	RAATTY	1 cut(s)	699
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	2 cut(s)	350, 590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	2 cut(s)	116, 720
XmaJI	CCTAGG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	416, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.