Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012276.1

Orthogroup ID

OG0000643

Physical Location & Seq

Genomic Coordinates Reverse (-)

37466 .. 39748

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012276.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgcttacccatttctcttccttcattctctctcttctcatccacctccatcttcatcatgagctccattgttcagagcctccagaagagaatgcccgcaaaccagggcaccctacccgcctcccaaggctccggcctcgtccaggcttcggctctccagcgaaggctctcgtccctctccctcaagttctagcccatctcctcctcggacaccacctgggccctacaacggtccaagtcggtctccgccatggtactagtggaggagaaattggtctagaacaacgccgcgtcaccttcgacgacaatgaaggctctaaattcttcaatgtcgccgttaaatcctcctggtctttcgaatccaattgcagcaaagagaatctgagccccgttatgaaaacctctcttttcacggtgtctacgatgtcgtttaagccactgaacgaaaattcgcagcggctatcggtggcgccgaagaagatggggtttgaggttgaagaagagaaaggtcgagacctggggaagatcgattcggagattgaggaaatcaagaaggagataagccgattgaattcgagtttggaattgcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.0

Weight (kDa)

7.9

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28230
fragaria_vesca	FvH4_3g16300 FvH4_6g12751 FvH4_6g44570 FvH4_6g44594 FvH4_7g07660
malus_domestica	MD09G1096400.v1.1 MD17G1084500.v1.1
prunus_persica	Prupe.3G231100_v2.0.a1
pyrus_communis	pycom09g02090 pycom17g08160
rosa_chinensis	RchiOBHm_Chr1g0342751 RchiOBHm_Chr2g0157591 RchiOBHm_Chr2g0161781 RchiOBHm_Chr3g0469881
rosa_laevigata	RLG00000007135 RLG00000010298 RLG00000021299 RLG00000021302 RLG00000029173 RLG00000029192
rosa_multiflora	Rmu_sc0000173.1_g000045 Rmu_sc0001403.1_g000033 Rmu_sc0001403.1_g000034 Rmu_sc0001993.1_g000002 Rmu_sc0001993.1_g000020 Rmu_sc0003662.1_g000014 Rmu_sc0011563.1_g000010 Rmu_sc0012276.1_g000010 Rmu_sc0026352.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038970 Rroxscaffold_2G00088610 Rroxscaffold_3G00231870 Rroxscaffold_4G00288710 Rroxscaffold_4G00313230 Rroxscaffold_6G00396080 Rroxscaffold_7G00184860
rosa_rugosa	Rorug01G0146100.1 Rorug02G0491800 Rorug02G0492600 Rorug03G0291200 Rorug05G0303900 Rorug05G0335100 Rorug05G0335200
rosa_samantha	Rh1AG028300 Rh1AG137400 Rh1AG162800 Rh1AG163600 Rh1AG163700 Rh1AG164400 Rh1AG164500 Rh1BG129500 Rh1BG129600 Rh1CG025800 Rh1CG129600 Rh1CG151800 Rh1CG152300 Rh1CG152800 Rh1CG153300 Rh1DG044700 Rh1DG133100 Rh2AG558000 Rh2BG571600 Rh2CG541700 Rh2DG549600 Rh2DG580500 Rh3BG178200 Rh3CG168900 Rh3DG076100 Rh3DG260000 Rh5AG515900 Rh6BG166400 Rh6DG108300 Rh7AG194200 Rh7DG200800 Rh7DG369800
rosa_wichuraiana	Rw2G046170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	108, 469
AccI	GTMKAC	1 cut(s)	419
AccII	CGCG	1 cut(s)	291
AciI	CCGC	5 cut(s)	97, 118, 247, 289, 457
AcsI	RAATTY	3 cut(s)	320, 448, 571
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	3 cut(s)	143, 149, 229
AgsI	TTSAA	3 cut(s)	328, 497, 571
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	5 cut(s)	103, 142, 216, 347, 516
AjuI	GAANNNNNNNTTGG	1 cut(s)	563
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	248, 507
AoxI	GGCC	2 cut(s)	134, 220
ApaI	GGGCCC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	369, 454
ApoI	RAATTY	3 cut(s)	320, 448, 571
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	3 cut(s)	220, 221, 232
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	2 cut(s)	111, 224
BanI	GGYRCC	2 cut(s)	108, 469
BanII	GRGCYC	3 cut(s)	66, 224, 389
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	381, 466
BccI	CCATC	3 cut(s)	57, 204, 475
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	5 cut(s)	105, 144, 218, 349, 518
BcoDI	GTCTC	2 cut(s)	248, 507
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	3 cut(s)	191, 258, 278
BfoI	RGCGCY	1 cut(s)	473
BisI	GCNGC	4 cut(s)	289, 370, 455, 458
BlsI	GCNGC	4 cut(s)	290, 371, 456, 459
Bme1390I	CCNGG	5 cut(s)	105, 144, 218, 349, 518
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	220, 221, 232
BmiI	GGNNCC	4 cut(s)	110, 131, 222, 471
BmrFI	CCNGG	5 cut(s)	105, 144, 218, 349, 518
BpmI	CTGGAG	2 cut(s)	66, 141
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	470
BsaI	GGTCTC	2 cut(s)	248, 507
BsaJI	CCNNGG	6 cut(s)	104, 125, 205, 217, 250, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 149, 229
BseBI	CCWGG	5 cut(s)	105, 144, 218, 349, 518
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	6 cut(s)	104, 125, 205, 217, 250, 517
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	143, 149, 229
BseMII	CTCAG	1 cut(s)	374
BseRI	GAGGAG	3 cut(s)	191, 194, 279
BseSI	GKGCMC	2 cut(s)	111, 224
BseXI	GCAGC	2 cut(s)	381, 466
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	136, 222
BshNI	GGYRCC	2 cut(s)	108, 469
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	143, 149, 229
BsmAI	GTCTC	2 cut(s)	248, 507
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	136, 222
Bso31I	GGTCTC	2 cut(s)	248, 507
Bsp119I	TTCGAA	1 cut(s)	357
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	4 cut(s)	66, 111, 224, 389
Bsp143I	GATC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	5 cut(s)	97, 118, 247, 289, 457
BspANI	GGCC	2 cut(s)	136, 222
BspCNI	CTCAG	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	4 cut(s)	110, 131, 222, 471
BspT104I	TTCGAA	1 cut(s)	357
BspT107I	GGYRCC	2 cut(s)	108, 469
BspTNI	GGTCTC	2 cut(s)	248, 507
BssECI	CCNNGG	6 cut(s)	104, 125, 205, 217, 250, 517
BssMI	GATC	1 cut(s)	525
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	2 cut(s)	125, 250
Bst2UI	CCWGG	5 cut(s)	105, 144, 218, 349, 518
Bst4CI	ACNGT	2 cut(s)	232, 415
Bst6I	CTCTTC	4 cut(s)	22, 39, 81, 495
BstACI	GRCGYC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	2 cut(s)	248, 507
BstMBI	GATC	1 cut(s)	525
BstNI	CCWGG	5 cut(s)	105, 144, 218, 349, 518
BstSCI	CCNGG	5 cut(s)	103, 142, 216, 347, 516
BstSLI	GKGCMC	2 cut(s)	111, 224
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	381, 466
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	136, 222
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	97
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	1 cut(s)	472
Cfr13I	GGNCC	3 cut(s)	220, 221, 232
ClaI	ATCGAT	1 cut(s)	528
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	59, 251
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	383
DinI	GGCGCC	1 cut(s)	471
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
Eam1104I	CTCTTC	4 cut(s)	22, 39, 81, 495
EarI	CTCTTC	4 cut(s)	22, 39, 81, 495
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	125, 250
Eco24I	GRGCYC	3 cut(s)	66, 224, 389
Eco31I	GGTCTC	2 cut(s)	248, 507
Eco47I	GGWCC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	5 cut(s)	103, 142, 216, 347, 516
EcoT14I	CCWWGG	2 cut(s)	125, 250
EcoT38I	GRGCYC	3 cut(s)	66, 224, 389
EgeI	GGCGCC	1 cut(s)	471
EheI	GGCGCC	1 cut(s)	471
ErhI	CCWWGG	2 cut(s)	125, 250
FaeI	CATG	2 cut(s)	62, 254
FaiI	YATR	3 cut(s)	60, 252, 395
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	58, 250
FauI	CCCGC	2 cut(s)	104, 125
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	4 cut(s)	289, 370, 455, 458
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	3 cut(s)	66, 224, 389
Fsp4HI	GCNGC	4 cut(s)	289, 370, 455, 458
FspBI	CTAG	3 cut(s)	191, 258, 278
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	4 cut(s)	289, 370, 455, 458
GsuI	CTGGAG	2 cut(s)	66, 141
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	136, 222
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	62, 254
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	3 cut(s)	359, 379, 530
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	76, 209, 384, 535
Hpy188III	TCNNGA	5 cut(s)	59, 83, 278, 512, 550
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	5 cut(s)	31, 157, 305, 307, 547
HpyCH4III	ACNGT	2 cut(s)	232, 415
HpyCH4V	TGCA	2 cut(s)	369, 589
HpyF3I	CTNAG	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	62, 254
HspAI	GCGC	1 cut(s)	470
KasI	GGCGCC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	2 cut(s)	69, 135
Lsp1109I	GCAGC	2 cut(s)	381, 466
MaeI	CTAG	3 cut(s)	191, 258, 278
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MfeI	CAATTG	1 cut(s)	364
MhlI	GDGCHC	4 cut(s)	66, 111, 224, 389
MluCI	AATT	6 cut(s)	270, 320, 364, 448, 571, 584
Mly113I	GGCGCC	1 cut(s)	470
MseI	TTAA	2 cut(s)	339, 432
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	5 cut(s)	105, 144, 218, 349, 518
MunI	CAATTG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	5 cut(s)	105, 144, 218, 349, 518
MvnI	CGCG	1 cut(s)	291
NarI	GGCGCC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	2 cut(s)	62, 254
NlaIV	GGNNCC	4 cut(s)	110, 131, 222, 471
NmuCI	GTSAC	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	357
PagI	TCATGA	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	2 cut(s)	419, 470
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	359, 379, 530
PkrI	GCNGC	4 cut(s)	290, 371, 456, 459
PluTI	GGCGCC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	5 cut(s)	103, 142, 216, 347, 516
PspGI	CCWGG	5 cut(s)	103, 142, 216, 347, 516
PspN4I	GGNNCC	4 cut(s)	110, 131, 222, 471
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	3 cut(s)	220, 221, 232
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	339, 432
SatI	GCNGC	4 cut(s)	289, 370, 455, 458
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	3 cut(s)	220, 221, 232
ScrFI	CCNGG	5 cut(s)	105, 144, 218, 349, 518
SduI	GDGCHC	4 cut(s)	66, 111, 224, 389
SetI	ASST	8 cut(s)	48, 66, 219, 299, 404, 495, 511, 519
SfoI	GGCGCC	1 cut(s)	471
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	6 cut(s)	270, 320, 364, 448, 571, 584
SsiI	CCGC	5 cut(s)	97, 118, 247, 289, 457
SspDI	GGCGCC	1 cut(s)	469
SspMI	CTAG	3 cut(s)	191, 258, 278
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	5 cut(s)	103, 142, 216, 347, 516
StyI	CCWWGG	2 cut(s)	125, 250
TaaI	ACNGT	2 cut(s)	232, 415
TaqI	TCGA	5 cut(s)	300, 357, 511, 528, 575
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	6 cut(s)	270, 320, 364, 448, 571, 584
TauI	GCSGC	2 cut(s)	291, 460
TfiI	GAWTC	3 cut(s)	359, 379, 530
Tru1I	TTAA	2 cut(s)	339, 432
Tru9I	TTAA	2 cut(s)	339, 432
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	369, 454
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	13, 44, 324, 410
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	3 cut(s)	320, 448, 571
XbaI	TCTAGA	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	3 cut(s)	191, 258, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.