Rroxscaffold_1G00038970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000643
Physical Location & Seq
Forward (+)
56527448 .. 56527887
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038970.1

Sequence Viewer

Length: 279 bp
ATGAGTGTTCTTGAATACCTAGATGCCATTAACGTCCCGGAGCTTCAGCCACTGAACAAAAATTCTGGGCGGCTATCGGTGGCGCCGAAGAAGATGGGGTTTGAGGTTCAAGAAGGGAAATGTCGATACCTGGGGAAGATCTATTCGGAGATTGAGGAAATTGAGAAGGAGATAAGCCGATTGAATTCGAGGTTGGAATTGCGGAAACTAGTGAAGGCCCAGAAGGTGGTGGAGAAGCGCGGCAGAGTTGTGGCAGCGAATTTCATGGAGCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.52

Weight (kDa)

9.33

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 226
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 70, 202, 240
AcsI RAATTY 3 cut(s) 61, 184, 259
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 14, 110, 184
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwNI CAGNNNCTG 1 cut(s) 52
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 3 cut(s) 61, 184, 259
AspLEI GCGC 2 cut(s) 85, 240
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 38
BanI GGYRCC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 38
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 2 cut(s) 20, 209
BfoI RGCGCY 1 cut(s) 86
BglII AGATCT 1 cut(s) 138
BisI GCNGC 3 cut(s) 71, 241, 255
BlsI GCNGC 3 cut(s) 72, 242, 256
Bme1390I CCNGG 2 cut(s) 38, 131
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 84, 270
BmrFI CCNGG 2 cut(s) 38, 131
BmsI GCATC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 3 cut(s) 70, 202, 240
BspANI GGCC 1 cut(s) 218
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 84, 270
BspT107I GGYRCC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 83
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 240
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 36, 129
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 2 cut(s) 85, 240
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 1 cut(s) 265
CviJI RGCY 6 cut(s) 43, 49, 73, 177, 218, 271
CviKI_1 RGCY 6 cut(s) 43, 49, 73, 177, 218, 271
DinI GGCGCC 1 cut(s) 84
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
FaeI CATG 1 cut(s) 268
FaiI YATR 2 cut(s) 266, 277
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 71, 241, 255
Fsp4HI GCNGC 3 cut(s) 71, 241, 255
FspBI CTAG 2 cut(s) 20, 209
GlaI GCGC 2 cut(s) 84, 239
GluI GCNGC 3 cut(s) 71, 241, 255
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 1 cut(s) 218
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 85, 240
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 2 cut(s) 83, 238
HinP1I GCGC 2 cut(s) 83, 238
HpaII CCGG 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 11, 110
HpyAV CCTTC 4 cut(s) 107, 160, 208, 217
HpyCH4IV ACGT 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 2 cut(s) 83, 238
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 40, 268
LpnPI CCDG 5 cut(s) 51, 51, 116, 143, 233
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 20, 209
MaeII ACGT 1 cut(s) 33
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 100, 103, 148
MflI RGATCY 1 cut(s) 138
MluCI AATT 5 cut(s) 61, 159, 184, 197, 259
Mly113I GGCGCC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 3 cut(s) 97, 148, 183
MseI TTAA 1 cut(s) 30
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 38, 131
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 240
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 1 cut(s) 38
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 84, 270
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 3 cut(s) 72, 242, 256
PluTI GGCGCC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 84, 270
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 138
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 71, 241, 255
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 38, 131
SetI ASST 7 cut(s) 21, 36, 45, 108, 132, 194, 228
SfaNI GCATC 1 cut(s) 13
SfoI GGCGCC 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 5 cut(s) 61, 159, 184, 197, 259
SsiI CCGC 3 cut(s) 70, 202, 240
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 2 cut(s) 20, 209
StyD4I CCNGG 2 cut(s) 36, 129
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 124, 188
TasI AATT 5 cut(s) 61, 159, 184, 197, 259
TauI GCSGC 2 cut(s) 73, 243
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 253, 264
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 226
XapI RAATTY 3 cut(s) 61, 184, 259
XspI CTAG 2 cut(s) 20, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.