Rh7DG369800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000643
Physical Location & Seq
Reverse (-)
50077520 .. 50077720
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG369800.1

Sequence Viewer

Length: 201 bp
ATGGCGCCGAAGAAGATGGGGTTTGAGGTTGAAGAAGATAAAGGTCGAGACCTAGGGAAGATCGATTCGGAGATTGAGGAAATCGAGAAAGAGATAAGCCGATTGAATTCGAGGCTGGAATTAGGGAAACTAGAGAAGGCCCAAAAGGTGGTGGAGAAGCGCGGCAGAGTTGTGGTGGTGAATTTCATGGAGCCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.57

Weight (kDa)

5.53

Isoelectric Point (pI)

64.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 148
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 162
AcsI RAATTY 2 cut(s) 106, 181
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 32, 106
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 2 cut(s) 106, 181
AspA2I CCTAGG 1 cut(s) 52
AspLEI GCGC 2 cut(s) 7, 162
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 190
AvrII CCTAGG 1 cut(s) 52
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 53, 131
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 163
BlnI CCTAGG 1 cut(s) 52
BlsI GCNGC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 6, 192
Bsa29I ATCGAT 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 140
BspDI ATCGAT 1 cut(s) 63
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 6, 192
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 5
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 162
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 60
BstUI CGCG 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 1 cut(s) 140
BsuTUI ATCGAT 1 cut(s) 63
CfoI GCGC 2 cut(s) 7, 162
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 63
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 99, 115, 140, 193
CviKI_1 RGCY 4 cut(s) 99, 115, 140, 193
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 52
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 190
FaiI YATR 1 cut(s) 188
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 2 cut(s) 53, 131
GlaI GCGC 2 cut(s) 6, 161
GluI GCNGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 140
HhaI GCGC 2 cut(s) 7, 162
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 2 cut(s) 5, 160
HinP1I GCGC 2 cut(s) 5, 160
HinfI GANTC 1 cut(s) 65
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 47, 85
HpyAV CCTTC 1 cut(s) 130
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 2 cut(s) 5, 160
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 1 cut(s) 101
MaeI CTAG 2 cut(s) 53, 131
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 5 cut(s) 22, 25, 44, 47, 70
MluCI AATT 3 cut(s) 106, 119, 181
Mly113I GGCGCC 1 cut(s) 5
MnlI CCTC 3 cut(s) 19, 70, 105
MvnI CGCG 1 cut(s) 162
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 6, 192
PfeI GAWTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 6, 192
PspPI GGNCC 1 cut(s) 139
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 139
SetI ASST 4 cut(s) 30, 46, 54, 150
SfoI GGCGCC 1 cut(s) 6
SgeI CNNG 7 cut(s) 59, 65, 97, 123, 128, 143, 173
Sse9I AATT 3 cut(s) 106, 119, 181
SsiI CCGC 1 cut(s) 162
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 53, 131
StyI CCWWGG 1 cut(s) 52
TaqI TCGA 4 cut(s) 46, 63, 84, 110
TasI AATT 3 cut(s) 106, 119, 181
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 148
XapI RAATTY 2 cut(s) 106, 181
XmaJI CCTAGG 1 cut(s) 52
XspI CTAG 2 cut(s) 53, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.