Rh1AG164500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000643
Physical Location & Seq
Reverse (-)
31459439 .. 31459723
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG164500.1

Sequence Viewer

Length: 285 bp
ATGAAAACAAAGTTATGGTTGATATCCCAGCATCTCAAATGCGACTTGAGTCCCTCTCAACTGCCGGATGATGATAAGGAAGATGGGAGCCGGTTTGAGAAGAAGTGCGTGTCATTGGTGGGGAAGCCACGTGGCATTGGGAGGGAGGGGTCAAGGAGCGTTGGATCGGAGAGTAGGATGAAGAAGAGGTGGGAGATTCCTAGTGAGGTGGTGGTGTTCCAGGGTTTGGAGGAGGACGGTGTTGCTGAAATGGGTAATGTGCTGCCGAAGATTAGGACCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.54

Weight (kDa)

8.64

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AclWI GGATC 1 cut(s) 172
AcvI CACGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 226
AjnI CCWGG 1 cut(s) 219
AlwI GGATC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 276
AvaII GGWCC 1 cut(s) 276
BbrPI CACGTG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 221
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 90
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 73, 183
BseLI CCNNNNNNNGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 65, 91
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 90
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 239, 280
Bst6I CTCTTC 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 131
BstF5I GGATG 2 cut(s) 73, 183
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 221
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 73, 183
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 276
CviJI RGCY 2 cut(s) 90, 127
CviKI_1 RGCY 2 cut(s) 90, 127
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 24
FaiI YATR 1 cut(s) 16
FaqI GGGAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 2 cut(s) 80, 190
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 31
HapII CCGG 2 cut(s) 65, 91
HinfI GANTC 2 cut(s) 49, 196
HpaII CCGG 2 cut(s) 65, 91
Hpy188I TCNGA 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 239, 280
HpyCH4IV ACGT 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 130
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 87, 156
LpnPI CCDG 5 cut(s) 41, 78, 104, 206, 233
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 130
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 5 cut(s) 92, 112, 193, 196, 280
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 7 cut(s) 64, 135, 139, 180, 199, 223, 226
MspI CCGG 2 cut(s) 65, 91
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
NdeII GATC 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 131
PshAI GACNNNNGTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 219
PspCI CACGTG 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 276
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 221
SetI ASST 3 cut(s) 133, 191, 210
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 239, 280
TaiI ACGT 1 cut(s) 133
TfiI GAWTC 1 cut(s) 196
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 17, 194
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 276
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.