Rh5AG515900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000643
Physical Location & Seq
Reverse (-)
87586988 .. 87593797
6810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG515900.1

Sequence Viewer

Length: 309 bp
ATGGACTCGGTAGTGAAATCTGGTTTGATTGATTTTCTGGTTAAAATGGATTTGGGGATTGGGGACGCTGCCGCGCCATCGTGGATGTCGCCAATTTATTCTTTTTGTCTAGTTGTGCATATTGAAGGGAGAGAGCTTTGTGGTCAAATGGTTTGGAGTGGTGATCAATTGTGTAAAAGGGACATACTCTTATCTGCTACCTTGAAATGTCGTGCTTTTGCAGGAAATACGTCCCTGGACACACATGATGGAGGTACCCCAGCTCCATGGGTTCGGGCCTGCAGCCAATCGCTTATTGGAGGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.9

Weight (kDa)

5.46

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccII CGCG 1 cut(s) 74
AciI CCGC 1 cut(s) 72
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 2 cut(s) 125, 205
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 2 cut(s) 136, 263
AluI AGCT 2 cut(s) 136, 263
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 2 cut(s) 68, 282
Asp718I GGTACC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 55, 294
BccI CCATC 2 cut(s) 85, 242
BciT130I CCWGG 1 cut(s) 236
BclI TGATCA 1 cut(s) 163
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 3 cut(s) 69, 72, 283
BlsI GCNGC 3 cut(s) 70, 73, 284
Bme1390I CCNGG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 234, 266
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 234, 266
BseGI GGATG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 55, 294
BseYI CCCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 254
BslFI GGGAC 3 cut(s) 77, 194, 217
BsmFI GGGAC 3 cut(s) 77, 194, 217
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 163
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 278
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 234, 266
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 280
BstDSI CCRYGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 280
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 2 cut(s) 55, 294
BstXI CCANNNNNNTGG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 245, 267
CviJI RGCY 4 cut(s) 136, 263, 278, 285
CviKI_1 RGCY 4 cut(s) 136, 263, 278, 285
CviQI GTAC 1 cut(s) 255
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 248, 270
FaiI YATR 6 cut(s) 120, 185, 246, 268, 305, 307
FaqI GGGAC 3 cut(s) 77, 194, 217
FatI CATG 2 cut(s) 244, 266
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 69, 72, 283
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 69, 72, 283
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 69, 72, 283
GsaI CCCAGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 278
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 248, 270
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 118, 221, 282
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 248, 270
HspAI GCGC 1 cut(s) 74
KpnI GGTACC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 7 cut(s) 6, 23, 207, 221, 248, 273, 292
Lsp1109I GCAGC 2 cut(s) 55, 294
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 230
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MfeI CAATTG 1 cut(s) 167
MluCI AATT 2 cut(s) 93, 167
MnlI CCTC 2 cut(s) 245, 293
MseI TTAA 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 266
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 248, 270
NlaIV GGNNCC 1 cut(s) 256
PkrI GCNGC 3 cut(s) 70, 73, 284
Psp6I CCWGG 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 284
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 3 cut(s) 69, 72, 283
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 236
SetI ASST 5 cut(s) 138, 203, 233, 256, 265
SfcI CTRYAG 1 cut(s) 280
Sse9I AATT 2 cut(s) 93, 167
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 266
TaiI ACGT 1 cut(s) 233
TasI AATT 2 cut(s) 93, 167
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseI GCWGC 2 cut(s) 68, 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.