Rh1DG044700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000643
Physical Location & Seq
Reverse (-)
7318687 .. 7318872
186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG044700.1

Sequence Viewer

Length: 186 bp
ATGGGGTTTGAGGTTGAAGAAGAGAAAGGTCGAGACCTAGGGAAGATCTATTCGGAGATTGAGGAAATTGAGAAAGAGATAAGCCGATTGAATTCGAGGCTGGAATTGCGGAAACTAGTGAAGGCCCAGAAAGTGGTAGAGAAGCTCGACAGAGTTGTGGCGGCGAATTTCATGGAGCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.11

Weight (kDa)

5.19

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 2 cut(s) 109, 161
AcsI RAATTY 2 cut(s) 91, 166
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 17, 91
AhlI ACTAGT 1 cut(s) 115
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 91, 166
AspA2I CCTAGG 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 124
AvrII CCTAGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 115
BfaI CTAG 2 cut(s) 38, 116
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 162
BlnI CCTAGG 1 cut(s) 37
BlsI GCNGC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 133
BshFI GGCC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 2 cut(s) 109, 161
BspANI GGCC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 15
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 124
CviAII CATG 1 cut(s) 172
CviJI RGCY 5 cut(s) 84, 100, 125, 145, 178
CviKI_1 RGCY 5 cut(s) 84, 100, 125, 145, 178
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 173, 184
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 38, 116
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 86, 140
MaeI CTAG 2 cut(s) 38, 116
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 29, 32, 55
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 66, 91, 104, 166
MnlI CCTC 3 cut(s) 4, 55, 90
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 45
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 124
SetI ASST 4 cut(s) 15, 31, 39, 147
SgeI CNNG 7 cut(s) 44, 50, 108, 113, 128, 139, 158
SpeI ACTAGT 1 cut(s) 115
Sse9I AATT 4 cut(s) 66, 91, 104, 166
SsiI CCGC 2 cut(s) 109, 161
SspMI CTAG 2 cut(s) 38, 116
StyI CCWWGG 1 cut(s) 37
TaqI TCGA 3 cut(s) 31, 95, 147
TasI AATT 4 cut(s) 66, 91, 104, 166
TauI GCSGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 160, 171
Van91I CCANNNNNTGG 1 cut(s) 133
XapI RAATTY 2 cut(s) 91, 166
XmaJI CCTAGG 1 cut(s) 37
XspI CTAG 2 cut(s) 38, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.