AT5G48330

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000878
Physical Location & Seq
Forward (+)
19585924 .. 19587857
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48330.2

Sequence Viewer

Length: 1368 bp
ATGCTTCGATCATGGTCGATCGCGAAACTACAAATCAGTAAAGTTTATTCATCCGATTCTCGCTTTTGCACACACGTTCTCTTCAATGGAGTTGTCAGACGACAATTCACGAGCACTAGCGGCGAAAGAAGAACAGTGATGAGCTTCGGTGACGGAAACCTTGGCGCTCTTGGTCTTTCATCATCGTCGATTCCAGGCATGGGAATGGACGCTTACGAACCCACCGTAGTTTCTAATTTGCCTTCCGATATCTCTTCCATATCCGCCGGACATTACCATTCTCTTGCCGTTACATCTAGCGGTGAGATTTGGGCTTGGGGTCGCAACGACGAAGGCCAGCTCGGTCGAATCGTAATTGATTCTAGTAGAGATTCAAGGAGTGAACCTAAGAGAGTGGAAGGTCTAGAGAATGTGAATGTCCAGGCAGCGTTTGCGTCTGGAGTTGTTTCAGCTGCTATTGGAGATGATGGCTCTTTGTGGGTTTGGGGAAGATCTAAAAGAGGACAGCTTGGTCTTGGAAATGGTATCATTGAAGCTCGAGTTCCTTCGAGAGTTGAAAATTTAGCTGCAGAGCACGTTGTTAAGGTATCATTAGGTTGGGGGCACGCACTTGCGCTTACTGTGGATGGTAAAGTTTTTGGATGGGGTTATGTAGCTGATGGAAGAGTAGGCAATGTTGGACTTCCACTTGAAGCATCTCTGCTAGATTCAATTACAGATGGGTCGATGAAAGGTCACCATGCTGCTGGTGATTTGAATCTTGAGGCAGCTGAAAAGAAGGTTGTGGAAGCAATGAGTAAAGAGAACGATATGCCAATTGCTTGGGAACCTTGTCTGGTGGAAGAAACGTGTAACGAGAAGGTAGCAGATATTGCGTGCGGTTCCGATCACTCCTTGATCCTTTGTCATGATGGCACACTTTTGAGCGCTGGGAGCAACATCTATGGTCAGTTGGGTCGGTCTAAACAAGATCTAGGAATGAAACCTGTTGATATAACTGAATCTCCGATCTCTATAGCAGCTGGTCTTGGTCATTCACTAGCTATCTGCAACAGGGGTGAAAGAAATATTCTCTCATGGGGTTGGAACCGAAGCCGGCAGCTTGGTAGGGGAAAACCGGAAAACCTGCCAAGAGAAGTAGAAGGTTTCGATGGGGAAAGTCCAGCTTCAGTATCAGCAGGGCGTGTGCATTCCTTGTGTGTAACAGAGAAAGGAGAAGCTTGGGTTTGGGGTTGTGGGAAGAATGGTAGGCTCGGTTTAGGAAGCTCGAGCGATGAGCCTGAACCGATGTTGTTAGAGGATGTAGAGGGTTGTGTTCTTCAAGCAGTCGCTGGCTTTGATCACAGCCTGATCTTAGTGGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

455

Amino Acids

48.32

Weight (kDa)

5.32

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 46 - 450 7.9e-89 RCC1-like domain
RCC1_2 PF13540 84 - 113 4.1e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 100 - 151 1.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 155 - 205 1.5e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 192 - 216 2.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 287 - 316 1.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 356 - 400 6.5e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 403 - 451 1.7e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 1134
AccII CGCG 1 cut(s) 23
AciI CCGC 4 cut(s) 120, 264, 300, 879
AclWI GGATC 1 cut(s) 892
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 1152
AfeI AGCGCT 1 cut(s) 928
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 2 cut(s) 73, 848
AgsI TTSAA 8 cut(s) 85, 375, 533, 557, 692, 711, 757, 1322
AjnI CCWGG 2 cut(s) 193, 420
Alw21I GWGCWC 2 cut(s) 116, 576
AlwI GGATC 1 cut(s) 892
AlwNI CAGNNNCTG 1 cut(s) 1331
Ama87I CYCGRG 2 cut(s) 537, 1267
Aor51HI AGCGCT 1 cut(s) 928
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 7 cut(s) 425, 452, 566, 743, 767, 1019, 1099
ApoI RAATTY 1 cut(s) 559
AspLEI GCGC 3 cut(s) 167, 616, 929
AsuHPI GGTGA 5 cut(s) 161, 314, 728, 761, 1070
AvaI CYCGRG 2 cut(s) 537, 1267
BaeGI GKGCMC 1 cut(s) 606
BauI CACGAG 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 116, 576
BbvI GCAGC 7 cut(s) 437, 439, 553, 730, 779, 1031, 1111
BccI CCATC 7 cut(s) 461, 620, 636, 653, 713, 905, 1145
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 195, 422
BclI TGATCA 1 cut(s) 1339
BfaI CTAG 7 cut(s) 117, 297, 363, 404, 704, 974, 1040
BfmI CTRYAG 2 cut(s) 567, 1014
BfoI RGCGCY 2 cut(s) 168, 930
BfuAI ACCTGC 1 cut(s) 1134
BglII AGATCT 2 cut(s) 491, 970
BisI GCNGC 8 cut(s) 121, 426, 453, 567, 744, 768, 1020, 1100
BlsI GCNGC 8 cut(s) 122, 427, 454, 568, 745, 769, 1021, 1101
Bme1390I CCNGG 2 cut(s) 195, 422
BmeT110I CYCGRG 2 cut(s) 537, 1267
BmiI GGNNCC 3 cut(s) 828, 883, 1088
BmrFI CCNGG 2 cut(s) 195, 422
BmsI GCATC 1 cut(s) 704
BpmI CTGGAG 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 1117
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 1095
Bse3DI GCAATG 2 cut(s) 679, 798
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 2 cut(s) 195, 422
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 4 cut(s) 50, 631, 647, 1306
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 2 cut(s) 679, 798
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 7 cut(s) 437, 439, 553, 730, 779, 1031, 1111
BseYI CCCAGC 1 cut(s) 929
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 2 cut(s) 21, 346
BshFI GGCC 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 21, 346
BsiHKAI GWGCWC 2 cut(s) 116, 576
BsiHKCI CYCGRG 2 cut(s) 537, 1267
BsiSI CCGG 3 cut(s) 267, 1096, 1118
BslI CCNNNNNNNGG 1 cut(s) 200
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 2 cut(s) 537, 1267
Bsp1286I GDGCHC 3 cut(s) 116, 576, 606
Bsp143I GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
Bsp68I TCGCGA 1 cut(s) 23
BspACI CCGC 4 cut(s) 120, 264, 300, 879
BspANI GGCC 1 cut(s) 336
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 3 cut(s) 828, 883, 1088
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 1134
BspPI GGATC 1 cut(s) 892
BsrDI GCAATG 2 cut(s) 679, 798
BsrFI RCCGGY 1 cut(s) 1095
BssAI RCCGGY 1 cut(s) 1095
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
BssSI CACGAG 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 160
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 195, 422
Bst4CI ACNGT 3 cut(s) 136, 226, 622
Bst6I CTCTTC 3 cut(s) 86, 259, 658
BstAPI GCANNNNNTGC 2 cut(s) 431, 872
BstC8I GCNNGC 5 cut(s) 338, 606, 877, 1097, 1333
BstDEI CTNAG 2 cut(s) 387, 1354
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 4 cut(s) 50, 631, 647, 1306
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 2 cut(s) 168, 930
BstHHI GCGC 3 cut(s) 167, 616, 929
BstKTI GATC 9 cut(s) 11, 21, 494, 889, 900, 973, 1011, 1342, 1353
BstMBI GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
BstMCI CGRYCG 2 cut(s) 21, 346
BstMWI GCNNNNNNNGC 4 cut(s) 120, 431, 872, 933
BstNI CCWGG 2 cut(s) 195, 422
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 193, 420
BstSFI CTRYAG 2 cut(s) 567, 1014
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 7 cut(s) 437, 439, 553, 730, 779, 1031, 1111
BstX2I RGATCY 2 cut(s) 491, 970
BstXI CCANNNNNNTGG 2 cut(s) 746, 822
BstYI RGATCY 2 cut(s) 491, 970
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 1287
BtsCI GGATG 4 cut(s) 50, 631, 647, 1306
BtsIMutI CAGTG 1 cut(s) 141
BtuMI TCGCGA 1 cut(s) 23
BveI ACCTGC 1 cut(s) 1134
Cac8I GCNNGC 5 cut(s) 338, 606, 877, 1097, 1333
CaiI CAGNNNCTG 1 cut(s) 1331
CciI TCATGA 1 cut(s) 907
CfoI GCGC 3 cut(s) 167, 616, 929
Cfr10I RCCGGY 1 cut(s) 1095
CseI GACGC 2 cut(s) 218, 423
CviAII CATG 5 cut(s) 12, 199, 740, 908, 1077
DdeI CTNAG 2 cut(s) 387, 1354
DpnI GATC 9 cut(s) 10, 20, 493, 888, 899, 972, 1010, 1341, 1352
DpnII GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
DrdI GACNNNNNNGTC 1 cut(s) 510
DseDI GACNNNNNNGTC 1 cut(s) 510
Eam1104I CTCTTC 3 cut(s) 86, 259, 658
EarI CTCTTC 3 cut(s) 86, 259, 658
EciI GGCGGA 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 160
Eco32I GATATC 1 cut(s) 250
Eco47III AGCGCT 1 cut(s) 928
Eco57I CTGAAG 1 cut(s) 1152
Eco88I CYCGRG 2 cut(s) 537, 1267
Eco91I GGTNACC 1 cut(s) 734
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 193, 420
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 5 cut(s) 15, 202, 743, 911, 1080
FalI AAGNNNNNCTT 2 cut(s) 1150, 1182
FatI CATG 5 cut(s) 11, 198, 739, 907, 1076
FbaI TGATCA 1 cut(s) 1339
Fnu4HI GCNGC 8 cut(s) 121, 426, 453, 567, 744, 768, 1020, 1100
FokI GGATG 4 cut(s) 37, 638, 654, 1313
Fsp4HI GCNGC 8 cut(s) 121, 426, 453, 567, 744, 768, 1020, 1100
FspBI CTAG 7 cut(s) 117, 297, 363, 404, 704, 974, 1040
GlaI GCGC 3 cut(s) 166, 615, 928
GluI GCNGC 8 cut(s) 121, 426, 453, 567, 744, 768, 1020, 1100
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 1 cut(s) 459
HaeII RGCGCY 2 cut(s) 168, 930
HaeIII GGCC 1 cut(s) 336
HapII CCGG 3 cut(s) 267, 1096, 1118
HgaI GACGC 2 cut(s) 218, 423
HhaI GCGC 3 cut(s) 167, 616, 929
Hin1II CATG 5 cut(s) 15, 202, 743, 911, 1080
Hin6I GCGC 3 cut(s) 165, 614, 927
HinP1I GCGC 3 cut(s) 165, 614, 927
HindIII AAGCTT 1 cut(s) 1218
HinfI GANTC 8 cut(s) 56, 190, 348, 359, 371, 707, 757, 1001
HpaII CCGG 3 cut(s) 267, 1096, 1118
HphI GGTGA 5 cut(s) 161, 314, 728, 761, 1070
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 5 cut(s) 55, 98, 247, 886, 1008
Hpy188III TCNNGA 7 cut(s) 22, 109, 404, 438, 549, 761, 908
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 2 cut(s) 190, 332
HpyAV CCTTC 7 cut(s) 252, 326, 392, 555, 772, 853, 1136
HpyCH4III ACNGT 3 cut(s) 136, 226, 622
HpyCH4IV ACGT 3 cut(s) 75, 576, 848
HpyCH4V TGCA 4 cut(s) 69, 569, 1050, 1189
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 431, 872, 933
HpyF3I CTNAG 2 cut(s) 387, 1354
HpySE526I ACGT 3 cut(s) 75, 576, 848
Hsp92II CATG 5 cut(s) 15, 202, 743, 911, 1080
HspAI GCGC 3 cut(s) 165, 614, 927
KroI GCCGGC 1 cut(s) 1095
KroNI GCCGGC 1 cut(s) 1097
Ksp22I TGATCA 1 cut(s) 1339
Kzo9I GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
LmnI GCTCC 1 cut(s) 933
Lsp1109I GCAGC 7 cut(s) 437, 439, 553, 730, 779, 1031, 1111
LweI GCATC 1 cut(s) 704
MaeI CTAG 7 cut(s) 117, 297, 363, 404, 704, 974, 1040
MaeII ACGT 3 cut(s) 75, 576, 848
MaeIII GTNAC 5 cut(s) 149, 289, 734, 851, 1201
MalI GATC 9 cut(s) 10, 20, 493, 888, 899, 972, 1010, 1341, 1352
MboI GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
MboII GAAGA 8 cut(s) 73, 141, 246, 501, 675, 854, 1252, 1310
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 2 cut(s) 491, 970
MhlI GDGCHC 3 cut(s) 116, 576, 606
MluCI AATT 6 cut(s) 104, 235, 354, 559, 711, 816
MmeI TCCRAC 2 cut(s) 658, 1064
MnlI CCTC 4 cut(s) 494, 757, 1291, 1300
MroNI GCCGGC 1 cut(s) 1095
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 3 cut(s) 452, 770, 1022
MspI CCGG 3 cut(s) 267, 1096, 1118
MspR9I CCNGG 2 cut(s) 195, 422
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 2 cut(s) 195, 422
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 120, 431, 872, 933
NaeI GCCGGC 1 cut(s) 1097
NdeII GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
NgoMIV GCCGGC 1 cut(s) 1095
NlaIII CATG 5 cut(s) 15, 202, 743, 911, 1080
NlaIV GGNNCC 3 cut(s) 828, 883, 1088
NmuCI GTSAC 2 cut(s) 149, 734
NruI TCGCGA 1 cut(s) 23
PaeR7I CTCGAG 2 cut(s) 537, 1267
PagI TCATGA 1 cut(s) 907
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 348
PctI GAATGC 1 cut(s) 1189
PdiI GCCGGC 1 cut(s) 1097
PfeI GAWTC 8 cut(s) 56, 190, 348, 359, 371, 707, 757, 1001
PkrI GCNGC 8 cut(s) 122, 427, 454, 568, 745, 769, 1021, 1101
Ple19I CGATCG 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 193, 420
PspEI GGTNACC 1 cut(s) 734
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 2 cut(s) 193, 420
PspN4I GGNNCC 3 cut(s) 828, 883, 1088
PspXI VCTCGAGB 2 cut(s) 537, 1267
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 1331
PsuI RGATCY 2 cut(s) 491, 970
PvuI CGATCG 1 cut(s) 21
PvuII CAGCTG 3 cut(s) 452, 770, 1022
RruI TCGCGA 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 8 cut(s) 121, 426, 453, 567, 744, 768, 1020, 1100
Sau3AI GATC 9 cut(s) 8, 18, 491, 886, 897, 970, 1008, 1339, 1350
ScrFI CCNGG 2 cut(s) 195, 422
SduI GDGCHC 3 cut(s) 116, 576, 606
SfaNI GCATC 1 cut(s) 704
SfcI CTRYAG 2 cut(s) 567, 1014
Sfr274I CTCGAG 2 cut(s) 537, 1267
SlaI CTCGAG 2 cut(s) 537, 1267
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 3 cut(s) 537, 761, 1267
SmoI CTYRAG 3 cut(s) 537, 761, 1267
Sse9I AATT 6 cut(s) 104, 235, 354, 559, 711, 816
SsiI CCGC 4 cut(s) 120, 264, 300, 879
SspI AATATT 1 cut(s) 1069
SspMI CTAG 7 cut(s) 117, 297, 363, 404, 704, 974, 1040
StyD4I CCNGG 2 cut(s) 193, 420
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 136, 226, 622
TaiI ACGT 3 cut(s) 78, 579, 851
TaqI TCGA 9 cut(s) 7, 17, 188, 346, 538, 548, 725, 1149, 1268
TaqII GACCGA 2 cut(s) 332, 948
TasI AATT 6 cut(s) 104, 235, 354, 559, 711, 816
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 8 cut(s) 56, 190, 348, 359, 371, 707, 757, 1001
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 2 cut(s) 149, 734
TseI GCWGC 7 cut(s) 425, 452, 566, 743, 767, 1019, 1099
Tsp45I GTSAC 2 cut(s) 149, 734
TspDTI ATGAA 4 cut(s) 39, 168, 743, 995
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 403
XhoI CTCGAG 2 cut(s) 537, 1267
XspI CTAG 7 cut(s) 117, 297, 363, 404, 704, 974, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.