Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Reverse (-)

33236313 .. 33238956

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG150600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTTAAAAATTTGTTCGATGGTCTAAAATCAAATATCAATTTTATGGGCCGGGATTCACGTGATGACAGGTATTGCAAGTGTGAGATGCCTATTAATCTGGATGACTTCATGTTGCGTTGTATGAAATGCAGAGACAGGTACCATCCAGCTTGCGAGAACATGTCAATTGAAGCAGCAAAAAAATTGGAGCACTTGAGTGTTCAGCTTGTTCTGCTAAAGAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032991 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

76

Amino Acids

9.08

Weight (kDa)

8.68

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	10
AcvI	CACGTG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	173
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	152, 208
AluI	AGCT	2 cut(s)	152, 208
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	10
AseI	ATTAAT	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	141
BbrPI	CACGTG	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	2 cut(s)	14, 153
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	62
BseGI	GGATG	3 cut(s)	109, 145, 231
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	109, 145, 231
BstMAI	GTCTC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	109, 145, 231
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	112, 163
CviJI	RGCY	3 cut(s)	51, 152, 208
CviKI_1	RGCY	3 cut(s)	51, 152, 208
CviQI	GTAC	1 cut(s)	142
DraI	TTTAAA	1 cut(s)	7
Eco72I	CACGTG	1 cut(s)	62
FaeI	CATG	2 cut(s)	115, 166
FaiI	YATR	4 cut(s)	47, 113, 125, 164
FatI	CATG	2 cut(s)	111, 162
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	116, 132
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	2 cut(s)	115, 166
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	78, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	115, 166
KpnI	GGTACC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	5 cut(s)	55, 65, 86, 124, 162
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	61
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	10, 40, 168, 185
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	6, 96
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	2 cut(s)	115, 166
NlaIV	GGNNCC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	198
PciI	ACATGT	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	62
PmlI	CACGTG	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	62
PscI	ACATGT	1 cut(s)	162
PshBI	ATTAAT	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	6, 96
SatI	GCNGC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	5 cut(s)	64, 74, 143, 154, 210
SfaNI	GCATC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	10, 40, 168, 185
StyD4I	CCNGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	18
TasI	AATT	4 cut(s)	10, 40, 168, 185
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	6, 96
Tru9I	TTAA	2 cut(s)	6, 96
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	100, 140
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.