Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

69477376 .. 69478829

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG494300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTTCAGAGAGCTAACACCATTGAGGGAAAGCGTGTGGTTCACTCGTTCAAGAACCACACCAAGCTCAAAAATATGGGAGCTGAGCATTACTACTGTAAATTTGAGTACAAGGCTGCTACTGCTTTTGCTCCTGATAAGAGTTGCTATGTATTGCAAGTCTGAGATGCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTGGACCCTAAGCACCGAAAGAAATGACTTAAATTGCAAGAGGCGATACAAAATGCAGTGCTGCTGTTTGTGTTCTTGCTGGTGCTCTTGGATTGCTATCATGTGGTATGTGGATTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

110

Amino Acids

13.26

Weight (kDa)

7.43

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	3 cut(s)	13, 66, 82
AluI	AGCT	3 cut(s)	13, 66, 82
Alw21I	GWGCWC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	115, 270
ApoI	RAATTY	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	102, 257
BisI	GCNGC	2 cut(s)	116, 271
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	2 cut(s)	117, 272
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	305
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	74, 153
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	102, 257
BsgI	GTGCAG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1720I	GCTNAGC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	75, 154
BspLI	GGNNCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	83, 162, 218
BstF5I	GGATG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	102, 257
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	194, 272
BtsIMutI	CAGTG	2 cut(s)	194, 272
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	181, 310
CviJI	RGCY	4 cut(s)	13, 66, 82, 115
CviKI_1	RGCY	4 cut(s)	13, 66, 82, 115
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	83, 162, 218
Eco47I	GGWCC	1 cut(s)	213
FaeI	CATG	2 cut(s)	184, 313
FaiI	YATR	5 cut(s)	76, 149, 182, 311, 318
FatI	CATG	2 cut(s)	180, 309
Fnu4HI	GCNGC	2 cut(s)	116, 271
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	116, 271
GluI	GCNGC	2 cut(s)	116, 271
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	2 cut(s)	184, 313
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	42, 213
Hpy188I	TCNGA	2 cut(s)	8, 163
Hpy188III	TCNNGA	2 cut(s)	51, 133
Hpy8I	GTNNAC	2 cut(s)	42, 213
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	156, 187, 201, 246, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	83, 162, 218
Hsp92II	CATG	2 cut(s)	184, 313
LmnI	GCTCC	2 cut(s)	79, 135
LpnPI	CCDG	4 cut(s)	146, 183, 193, 274
Lsp1109I	GCAGC	2 cut(s)	102, 257
LweI	GCATC	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	100, 241
MnlI	CCTC	4 cut(s)	18, 187, 188, 243
MseI	TTAA	1 cut(s)	239
MspI	CCGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	184, 313
NlaIV	GGNNCC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	117, 272
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	2 cut(s)	116, 271
Sau96I	GGNCC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	4 cut(s)	15, 68, 84, 180
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	2 cut(s)	100, 241
TaaI	ACNGT	1 cut(s)	97
TasI	AATT	2 cut(s)	100, 241
TatI	WGTACW	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	194, 272
TseI	GCWGC	2 cut(s)	115, 270
TspRI	CASTG	2 cut(s)	194, 272
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.