Rh2AG145300

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000878
Physical Location & Seq
Forward (+)
13280563 .. 13282819
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG145300.1

Sequence Viewer

Length: 1326 bp
ATGCCAGGACTGGGATCGCTGGTGAAGAACCAGCGTCTAGTAAACGCGGTTGTCCAAAGGTTTCAGAGATGCATGACCACCACAACAGCCGTCATGAGCTTCGGGGACGGCAACCATGGCGCTCTGGGCTTGCCCACTTCCTTAATGGGCCTTGGTGTGGACGCCTACGAGCCCACCCGGGTCCCTTCTCTACCTCCTGACATCACCAGCGTCACCGCCGGGCATTACCACTCCCTGGCCGTCACTTCCGAAGGCCAGCTCTGGGCTTGGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCCAGAGATTTGTGGAATGAACCAAGGAGAGTAACAGGGTTGGATCAAGTAAATGTTTGTTCTGCATTTGCATCCGGTGTCATTTCTGCGGCCGTTGGAGATGATGGTTCTTTGTGGGTTTGGGGAAAGTCAAAGCGTGGCCAGCTTGGTCTGGGAGAGCAAGTCATGGAGGCTGTGGTTCCTTCCCGAGTTGAAGCACTTGCTGGAGAAAAAATAACTAAGGTTGCACTTGGTTGGGGGCATGTTCTTGCATTGACTGAGGATGGAAAGTTGTTTGCTTGGGGTTATTTTGCTGATGGTAGGTTAGGAAGCATTAAAGAATCTTTGGAGACATCTCAACTGGAATATACTTCCAATAATCAAGAACTGTCGAGTTCATCTTTGGAAGCTGTTGAGAAGCTGGTTTTAGAAGGAATGGCCAAGGAGAATAACATGCCAATAGTTTGGGAACCCAGTTTAGTGAGGGAACTACAGTGTATTGAAGTTGTAGACATTGCATGTGGTCTTGATCATTCATTAATTCTTTGTGGTGATGGGACGCTACTGAGCTGTGGGAGCAATGTATATGGTCAGTTGGGAAGAGAAAAACAGGATGTGGGATTGTTTCCTGTTGATATAAGTTTCCGTCCAATGTCTATAGCAGCCGGGCTTGGCCATTCTTTGGCAATTTGCCAGGTTCCATCATCAGATGTTATAGGAGGAGCCGCAGGTGTCATTACATGGGGTTGGAATCAGACCTCTCAGCTCGGTAGGGATGGGCCAGAAAATATTCCATTAGGAGTTGAAGGCTTGGAAGGGGAAACTCCTGTATCAGTAGGAGGAGGTCGTGTGCATTCCATTGCTCTAACATCAGAGAGAGAAGTGTGGGTTTGGGGTAGTGGTAAGAATGGAAGGCTTGGGTTAGGAAGCTCCTGTGATGAACCTGAACCAATTTTGCTGGACTCTGTAGAGGGTTGTGATGTTTTACAAGCTGTGTCAGGGTTTGATCATAATCTTCTCTTAATTGCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

441

Amino Acids

46.65

Weight (kDa)

4.75

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 31 - 436 4.9e-81 RCC1-like domain
RCC1 PF00415 33 - 81 3.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 68 - 93 1.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 84 - 136 4e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 139 - 189 7.6e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 176 - 203 3.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 266 - 295 1e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 282 - 327 6.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 342 - 386 2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 391 - 438 3e-08 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1010
AbsI CCTCGAGG 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 1010
AccB7I CCANNNNNTGG 2 cut(s) 235, 973
AccI GTMKAC 1 cut(s) 801
AccII CGCG 1 cut(s) 47
AciI CCGC 4 cut(s) 47, 216, 401, 1017
AclWI GGATC 2 cut(s) 22, 363
AcoI YGGCCR 6 cut(s) 237, 295, 402, 451, 729, 964
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 973
AgsI TTSAA 3 cut(s) 506, 794, 1097
AjnI CCWGG 3 cut(s) 4, 234, 984
Alw26I GTCTC 2 cut(s) 270, 635
AlwI GGATC 2 cut(s) 22, 363
Ama87I CYCGRG 3 cut(s) 177, 281, 498
ApeKI GCWGC 1 cut(s) 953
AseI ATTAAT 1 cut(s) 830
Asp700I GAANNNNTTC 1 cut(s) 1080
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 6 cut(s) 148, 181, 271, 286, 305, 1070
AsuC2I CCSGG 4 cut(s) 178, 179, 220, 958
AsuHPI GGTGA 4 cut(s) 34, 196, 205, 854
AvaI CYCGRG 3 cut(s) 177, 281, 498
AvaII GGWCC 2 cut(s) 181, 305
BaeI ACNNNNGTAYC 2 cut(s) 1104, 1137
BalI TGGCCA 3 cut(s) 453, 731, 966
BanII GRGCYC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 965
BccI CCATC 6 cut(s) 410, 569, 602, 839, 1000, 1061
BceAI ACGGC 5 cut(s) 74, 124, 224, 282, 389
BciT130I CCWGG 3 cut(s) 6, 236, 986
BclI TGATCA 2 cut(s) 820, 1297
BcnI CCSGG 4 cut(s) 178, 179, 220, 958
BcoDI GTCTC 2 cut(s) 270, 635
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 3 cut(s) 782, 948, 1257
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 1010
BisI GCNGC 3 cut(s) 402, 954, 1017
BlsI GCNGC 3 cut(s) 403, 955, 1018
Bme1390I CCNGG 7 cut(s) 6, 178, 179, 220, 236, 958, 986
Bme18I GGWCC 2 cut(s) 181, 305
BmeT110I CYCGRG 3 cut(s) 177, 281, 498
BmgT120I GGNCC 6 cut(s) 148, 181, 271, 286, 305, 1070
BmiI GGNNCC 7 cut(s) 182, 183, 272, 492, 762, 990, 1015
BmrFI CCNGG 7 cut(s) 6, 178, 179, 220, 236, 958, 986
BmrI ACTGGG 2 cut(s) 20, 759
BmsI GCATC 2 cut(s) 59, 392
BmuI ACTGGG 2 cut(s) 20, 759
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 4 cut(s) 178, 179, 220, 958
BsaBI GATNNNNATC 1 cut(s) 1302
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 7 cut(s) 115, 151, 177, 234, 298, 335, 732
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 4 cut(s) 459, 489, 1125, 1155
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 973
Bse1I ACTGG 3 cut(s) 15, 657, 765
Bse3DI GCAATG 3 cut(s) 804, 877, 1149
Bse8I GATNNNNATC 1 cut(s) 1302
BseBI CCWGG 3 cut(s) 6, 236, 986
BseDI CCNNGG 7 cut(s) 115, 151, 177, 234, 298, 335, 732
BseGI GGATG 4 cut(s) 383, 580, 910, 1072
BseJI GATNNNNATC 1 cut(s) 1302
BseLI CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 973
BseMI GCAATG 3 cut(s) 804, 877, 1149
BseMII CTCAG 3 cut(s) 561, 848, 1067
BseNI ACTGG 3 cut(s) 15, 657, 765
BseRI GAGGAG 2 cut(s) 1026, 1146
BseX3I CGGCCG 2 cut(s) 295, 402
BseXI GCAGC 1 cut(s) 965
BseYI CCCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 47
Bsh1285I CGRYCG 2 cut(s) 298, 405
BsiEI CGRYCG 2 cut(s) 298, 405
BsiHKCI CYCGRG 3 cut(s) 177, 281, 498
BsiSI CCGG 4 cut(s) 178, 219, 387, 957
BslFI GGGAC 3 cut(s) 119, 167, 862
BslI CCNNNNNNNGG 5 cut(s) 11, 157, 235, 262, 973
BsmAI GTCTC 2 cut(s) 270, 635
BsmFI GGGAC 3 cut(s) 119, 167, 862
BsmI GAATGC 1 cut(s) 1144
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 3 cut(s) 177, 281, 498
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 4 cut(s) 14, 355, 820, 1297
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 4 cut(s) 47, 216, 401, 1017
BspCNI CTCAG 3 cut(s) 562, 849, 1066
BspFNI CGCG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 7 cut(s) 182, 183, 272, 492, 762, 990, 1015
BspMI ACCTGC 1 cut(s) 1010
BspPI GGATC 2 cut(s) 22, 363
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 3 cut(s) 804, 877, 1149
BsrI ACTGG 3 cut(s) 15, 657, 765
BssECI CCNNGG 7 cut(s) 115, 151, 177, 234, 298, 335, 732
BssMI GATC 4 cut(s) 14, 355, 820, 1297
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 4 cut(s) 115, 151, 335, 732
Bst2UI CCWGG 3 cut(s) 6, 236, 986
Bst4CI ACNGT 2 cut(s) 681, 786
Bst6I CTCTTC 1 cut(s) 886
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 131, 257, 455
BstDEI CTNAG 4 cut(s) 531, 570, 857, 1053
BstDSI CCRYGG 2 cut(s) 115, 298
BstF5I GGATG 4 cut(s) 383, 580, 910, 1072
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 4 cut(s) 17, 358, 823, 1300
BstMAI GTCTC 2 cut(s) 270, 635
BstMBI GATC 4 cut(s) 14, 355, 820, 1297
BstMCI CGRYCG 2 cut(s) 298, 405
BstMWI GCNNNNNNNGC 4 cut(s) 117, 126, 454, 867
BstNI CCWGG 3 cut(s) 6, 236, 986
BstNSI RCATGY 3 cut(s) 557, 748, 813
BstSCI CCNGG 7 cut(s) 4, 176, 177, 218, 234, 956, 984
BstSFI CTRYAG 3 cut(s) 782, 948, 1257
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 965
BstXI CCANNNNNNTGG 1 cut(s) 756
BstZI CGGCCG 2 cut(s) 295, 402
BtgI CCRYGG 2 cut(s) 115, 298
BtsCI GGATG 4 cut(s) 383, 580, 910, 1072
BtsIMutI CAGTG 1 cut(s) 791
BveI ACCTGC 1 cut(s) 1010
Cac8I GCNNGC 3 cut(s) 131, 257, 455
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 6 cut(s) 148, 181, 271, 286, 305, 1070
Cfr9I CCCGGG 1 cut(s) 177
CseI GACGC 4 cut(s) 23, 170, 199, 859
CviAII CATG 8 cut(s) 73, 94, 116, 478, 554, 745, 810, 1032
DdeI CTNAG 4 cut(s) 531, 570, 857, 1053
DpnI GATC 4 cut(s) 16, 357, 822, 1299
DpnII GATC 4 cut(s) 14, 355, 820, 1297
EaeI YGGCCR 6 cut(s) 237, 295, 402, 451, 729, 964
EagI CGGCCG 2 cut(s) 295, 402
Eam1104I CTCTTC 1 cut(s) 886
EarI CTCTTC 1 cut(s) 886
EclXI CGGCCG 2 cut(s) 295, 402
Eco130I CCWWGG 4 cut(s) 115, 151, 335, 732
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 181, 305
Eco52I CGGCCG 2 cut(s) 295, 402
Eco88I CYCGRG 3 cut(s) 177, 281, 498
EcoO109I RGGNCCY 2 cut(s) 181, 305
EcoRII CCWGG 3 cut(s) 4, 234, 984
EcoT14I CCWWGG 4 cut(s) 115, 151, 335, 732
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 4 cut(s) 115, 151, 335, 732
FaeI CATG 8 cut(s) 76, 97, 119, 481, 557, 748, 813, 1035
FaqI GGGAC 3 cut(s) 119, 167, 862
FatI CATG 8 cut(s) 72, 93, 115, 477, 553, 744, 809, 1031
FbaI TGATCA 2 cut(s) 820, 1297
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 3 cut(s) 402, 954, 1017
FokI GGATG 4 cut(s) 370, 587, 917, 1079
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 402, 954, 1017
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 402, 954, 1017
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 4 cut(s) 178, 219, 387, 957
HgaI GACGC 4 cut(s) 23, 170, 199, 859
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 8 cut(s) 76, 97, 119, 481, 557, 748, 813, 1035
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 3 cut(s) 632, 1042, 1253
HpaII CCGG 4 cut(s) 178, 219, 387, 957
HphI GGTGA 4 cut(s) 34, 196, 205, 854
Hpy166II GTNNAC 3 cut(s) 43, 160, 802
Hpy188I TCNGA 5 cut(s) 66, 250, 1000, 1047, 1165
Hpy188III TCNNGA 5 cut(s) 94, 197, 498, 674, 818
Hpy8I GTNNAC 3 cut(s) 43, 160, 802
HpyAV CCTTC 8 cut(s) 195, 245, 318, 504, 716, 1091, 1100, 1197
HpyCH4III ACNGT 2 cut(s) 681, 786
HpyCH4V TGCA 7 cut(s) 72, 377, 383, 539, 563, 809, 1144
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 126, 454, 867
HpyF3I CTNAG 4 cut(s) 531, 570, 857, 1053
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 8 cut(s) 76, 97, 119, 481, 557, 748, 813, 1035
HspAI GCGC 1 cut(s) 120
KflI GGGWCCC 1 cut(s) 181
Ksp22I TGATCA 2 cut(s) 820, 1297
Kzo9I GATC 4 cut(s) 14, 355, 820, 1297
LmnI GCTCC 3 cut(s) 867, 1013, 1226
Lsp1109I GCAGC 1 cut(s) 965
LweI GCATC 2 cut(s) 59, 392
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 211, 241, 343
MalI GATC 4 cut(s) 16, 357, 822, 1299
MboI GATC 4 cut(s) 14, 355, 820, 1297
MboII GAAGA 3 cut(s) 37, 903, 1298
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 3 cut(s) 453, 731, 966
MluCI AATT 4 cut(s) 831, 978, 1242, 1314
MluNI TGGCCA 3 cut(s) 453, 731, 966
MlyI GAGTC 1 cut(s) 1247
MmeI TCCRAC 3 cut(s) 333, 388, 1019
Mox20I TGGCCA 3 cut(s) 453, 731, 966
Mph1103I ATGCAT 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 1080
MscI TGGCCA 3 cut(s) 453, 731, 966
MseI TTAA 4 cut(s) 143, 627, 830, 1313
Msp20I TGGCCA 3 cut(s) 453, 731, 966
MspI CCGG 4 cut(s) 178, 219, 387, 957
MspR9I CCNGG 7 cut(s) 6, 178, 179, 220, 236, 958, 986
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 3 cut(s) 6, 236, 986
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 117, 126, 454, 867
NciI CCSGG 4 cut(s) 178, 179, 220, 958
NcoI CCATGG 1 cut(s) 115
NdeII GATC 4 cut(s) 14, 355, 820, 1297
NlaIII CATG 8 cut(s) 76, 97, 119, 481, 557, 748, 813, 1035
NlaIV GGNNCC 7 cut(s) 182, 183, 272, 492, 762, 990, 1015
NmeAIII GCCGAG 2 cut(s) 273, 299
NmuCI GTSAC 2 cut(s) 211, 241
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 3 cut(s) 557, 748, 813
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 93
PaqCI CACCTGC 1 cut(s) 1010
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 1080
PfeI GAWTC 2 cut(s) 632, 1042
PflMI CCANNNNNTGG 2 cut(s) 235, 973
PkrI GCNGC 3 cut(s) 403, 955, 1018
PleI GAGTC 1 cut(s) 1247
PpsI GAGTC 1 cut(s) 1247
PpuMI RGGWCCY 2 cut(s) 181, 305
PshBI ATTAAT 1 cut(s) 830
Psp5II RGGWCCY 2 cut(s) 181, 305
Psp6I CCWGG 3 cut(s) 4, 234, 984
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 3 cut(s) 4, 234, 984
PspN4I GGNNCC 7 cut(s) 182, 183, 272, 492, 762, 990, 1015
PspPI GGNCC 6 cut(s) 148, 181, 271, 286, 305, 1070
PspPPI RGGWCCY 2 cut(s) 181, 305
PspXI VCTCGAGB 1 cut(s) 281
SaqAI TTAA 4 cut(s) 143, 627, 830, 1313
SatI GCNGC 3 cut(s) 402, 954, 1017
Sau3AI GATC 4 cut(s) 14, 355, 820, 1297
Sau96I GGNCC 6 cut(s) 148, 181, 271, 286, 305, 1070
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 7 cut(s) 6, 178, 179, 220, 236, 958, 986
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 2 cut(s) 59, 392
SfcI CTRYAG 3 cut(s) 782, 948, 1257
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 2 cut(s) 181, 305
SlaI CTCGAG 1 cut(s) 281
SmaI CCCGGG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 831, 978, 1242, 1314
SsiI CCGC 4 cut(s) 47, 216, 401, 1017
SspI AATATT 1 cut(s) 1081
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 7 cut(s) 4, 176, 177, 218, 234, 956, 984
StyI CCWWGG 4 cut(s) 115, 151, 335, 732
TaaI ACNGT 2 cut(s) 681, 786
TaqI TCGA 2 cut(s) 282, 683
TasI AATT 4 cut(s) 831, 978, 1242, 1314
TauI GCSGC 2 cut(s) 404, 1019
TfiI GAWTC 2 cut(s) 632, 1042
Tru1I TTAA 4 cut(s) 143, 627, 830, 1313
Tru9I TTAA 4 cut(s) 143, 627, 830, 1313
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 2 cut(s) 211, 241
TseI GCWGC 1 cut(s) 953
Tsp45I GTSAC 2 cut(s) 211, 241
TspDTI ATGAA 4 cut(s) 345, 678, 816, 1245
TspGWI ACGGA 1 cut(s) 926
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 1 cut(s) 791
Van91I CCANNNNNTGG 2 cut(s) 235, 973
VpaK11BI GGWCC 2 cut(s) 181, 305
VspI ATTAAT 1 cut(s) 830
XceI RCATGY 3 cut(s) 557, 748, 813
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 296
XhoI CTCGAG 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 1080
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.