Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

68437134 .. 68438288

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG479300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGATCACTATGATGTTCAGAGTGCTAACACCATTGAGGGAAAGCGTGTGGTTCACTCGTTCAAGAACTACACCAAGCTCGAAAATGTGGGAGCTGAGCATTACTACTGTAGATTTGAGTACAAGGTTGCTACTGGGGCTTTTACTCCTGATAGAGTTGCTATGTATTGCAAGTCTGAGATGCCGTATAACCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTTTCATCCAGCATGCGTGAACATCTCGAATGAAGTAGCCAAAAAATGGGTCTATGGGAGTTGTAAACATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH PHD

Protein Analysis

103

Amino Acids

12.0

Weight (kDa)

6.18

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	58 - 95	2.9e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	2 cut(s)	82, 98
AluI	AGCT	2 cut(s)	82, 98
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AsuC2I	CCSGG	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	112
BlpI	GCTNAGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	142, 239
BseGI	GGATG	2 cut(s)	205, 241
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	90, 171
BseNI	ACTGG	2 cut(s)	142, 239
BseRI	GAGGAG	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	7
Bsp1720I	GCTNAGC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	91, 172
BsrI	ACTGG	2 cut(s)	142, 239
BssMI	GATC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	99, 180
BstF5I	GGATG	2 cut(s)	205, 241
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	205, 241
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	208, 249
CviJI	RGCY	4 cut(s)	82, 98, 143, 275
CviKI_1	RGCY	4 cut(s)	82, 98, 143, 275
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	99, 180
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
FaeI	CATG	2 cut(s)	211, 252
FaiI	YATR	7 cut(s)	15, 167, 192, 209, 250, 291, 310
FatI	CATG	2 cut(s)	207, 248
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	212, 228
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	2 cut(s)	211, 252
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	58, 256, 302
Hpy188I	TCNGA	3 cut(s)	7, 24, 181
Hpy188III	TCNNGA	3 cut(s)	67, 152, 262
Hpy8I	GTNNAC	3 cut(s)	58, 256, 302
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	174, 214, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	99, 180
Hsp92II	CATG	2 cut(s)	211, 252
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	5 cut(s)	123, 165, 210, 220, 258
LweI	GCATC	1 cut(s)	174
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	34, 214, 215
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	211, 252
NspI	RCATGY	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	84, 100, 132, 207
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	15
SphI	GCATGC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	84, 263
TatI	WGTACW	1 cut(s)	123
TscAI	CASTG	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	230, 282
TspRI	CASTG	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	282
XceI	RCATGY	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.