Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000878

Physical Location & Seq

Genomic Coordinates Forward (+)

12799034 .. 12800011

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG149500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCAGGACCAGGATCGCTGGTGAAGAACCAGCGTCTAGTAAACGTGATTGTCCAAAGGTTTCAGAGATGTATGACCACCGCCACAGCTGTCCTGAGCTTCGGGGACGGCAACCATGGCGCTACCCGGGTCCCTTCTCTGCCTCCTGACATCACCAGAGTCACCGCCGGGCCTTACCAATCCCTGGCCGTCACTTCCGAAGGTCAGCTTTGGGCTTGGGGCCGAGACCTCGAGGCCCAGCTCGGCCGTGGAGGTCCTTCTCCGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1 RCC1_2

Protein Analysis

89

Amino Acids

9.43

Weight (kDa)

10.02

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	32 - 84	4.3e-08	RCC1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48330 AT5G48330
fragaria_vesca	FvH4_1g13040 FvH4_1g13050
malus_domestica	MD15G1259200.v1.1
prunus_persica	Prupe.7G156600_v2.0.a1 Prupe.7G156600_v2.0.a1
pyrus_communis	pycom15g22720
rosa_chinensis	RchiOBHm_Chr2g0101211 RchiOBHm_Chr2g0101221 RchiOBHm_Chr7g0240851 RchiOBHm_Chr7g0240861
rosa_laevigata	RLG00000000616 RLG00000000618 RLG00000017056 RLG00000017059 RLG00000017060 RLG00000017062
rosa_multiflora	Rmu_co8519839.1_g000002 Rmu_sc0002313.1_g000012 Rmu_sc0002313.1_g000015 Rmu_sc0002313.1_g000018 Rmu_sc0004821.1_g000018 Rmu_sc0004821.1_g000019 Rmu_sc0006314.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141490 Rroxscaffold_3G00219530 Rroxscaffold_3G00219570
rosa_rugosa	Rorug02G0100200 Rorug07G0339600
rosa_samantha	Rh1CG150600 Rh2AG144700 Rh2AG144800 Rh2AG144900 Rh2AG145100 Rh2AG145200 Rh2AG145300 Rh2BG149500 Rh2BG149800 Rh2BG149900 Rh2BG150200 Rh2BG150400 Rh2BG150500 Rh2BG150600 Rh2CG151000 Rh2DG150200 Rh2DG150300 Rh2DG150500 Rh2DG150600 Rh2DG150700 Rh7AG493900 Rh7AG494000 Rh7AG494300 Rh7BG466000 Rh7CG512300 Rh7CG512400 Rh7CG512500 Rh7DG479000 Rh7DG479100 Rh7DG479200 Rh7DG479300
rosa_wichuraiana	Rw0G010690 Rw0G010700 Rw2G011320 Rw7G041790 Rw7G041810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	2 cut(s)	81, 165
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	2 cut(s)	186, 244
AfiI	CCNNNNNNNGG	2 cut(s)	11, 184
AjnI	CCWGG	3 cut(s)	4, 10, 183
AluBI	AGCT	4 cut(s)	89, 99, 208, 241
AluI	AGCT	4 cut(s)	89, 99, 208, 241
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	2 cut(s)	126, 230
AoxI	GGCC	5 cut(s)	170, 186, 220, 234, 244
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	6 cut(s)	8, 130, 170, 220, 235, 254
AsuC2I	CCSGG	3 cut(s)	127, 128, 169
AsuHPI	GGTGA	3 cut(s)	34, 145, 154
AvaI	CYCGRG	2 cut(s)	126, 230
AvaII	GGWCC	3 cut(s)	8, 130, 254
BceAI	ACGGC	3 cut(s)	124, 173, 231
BciT130I	CCWGG	3 cut(s)	6, 12, 185
BcnI	CCSGG	3 cut(s)	127, 128, 169
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	123
Bme1390I	CCNGG	6 cut(s)	6, 12, 127, 128, 169, 185
Bme18I	GGWCC	3 cut(s)	8, 130, 254
BmeT110I	CYCGRG	2 cut(s)	126, 230
BmgT120I	GGNCC	6 cut(s)	8, 130, 170, 220, 235, 254
BmiI	GGNNCC	3 cut(s)	131, 132, 221
BmrFI	CCNGG	6 cut(s)	6, 12, 127, 128, 169, 185
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	3 cut(s)	127, 128, 169
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	4 cut(s)	115, 126, 183, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 184
BseBI	CCWGG	3 cut(s)	6, 12, 185
BseDI	CCNNGG	4 cut(s)	115, 126, 183, 247
BseLI	CCNNNNNNNGG	2 cut(s)	11, 184
BseMII	CTCAG	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	5 cut(s)	172, 188, 222, 236, 246
BsiEI	CGRYCG	1 cut(s)	247
BsiHKCI	CYCGRG	2 cut(s)	126, 230
BsiSI	CCGG	2 cut(s)	127, 168
BslFI	GGGAC	2 cut(s)	116, 119
BslI	CCNNNNNNNGG	2 cut(s)	11, 184
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	116, 119
BsnI	GGCC	5 cut(s)	172, 188, 222, 236, 246
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	2 cut(s)	126, 230
Bsp143I	GATC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	81, 165
BspANI	GGCC	5 cut(s)	172, 188, 222, 236, 246
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	131, 132, 221
BspPI	GGATC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	219
BssECI	CCNNGG	4 cut(s)	115, 126, 183, 247
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	3 cut(s)	6, 12, 185
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	2 cut(s)	115, 247
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	3 cut(s)	6, 12, 185
BstSCI	CCNGG	6 cut(s)	4, 10, 125, 126, 167, 183
BstZI	CGGCCG	1 cut(s)	244
BsuRI	GGCC	5 cut(s)	172, 188, 222, 236, 246
BtgI	CCRYGG	2 cut(s)	115, 247
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	6 cut(s)	8, 130, 170, 220, 235, 254
Cfr9I	CCCGGG	1 cut(s)	126
CseI	GACGC	1 cut(s)	23
CviAII	CATG	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	2 cut(s)	186, 244
EagI	CGGCCG	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	3 cut(s)	8, 130, 254
Eco52I	CGGCCG	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	126, 230
EcoO109I	RGGNCCY	2 cut(s)	130, 254
EcoRII	CCWGG	3 cut(s)	4, 10, 183
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	119
FaiI	YATR	2 cut(s)	74, 117
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	116, 119
FatI	CATG	1 cut(s)	115
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	121
GsaI	CCCAGC	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	5 cut(s)	172, 188, 222, 236, 246
HapII	CCGG	2 cut(s)	127, 168
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	127, 168
HphI	GGTGA	3 cut(s)	34, 145, 154
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	66, 199, 264
Hpy188III	TCNNGA	2 cut(s)	94, 146
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	144, 194, 267
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	120
KflI	GGGWCCC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	160, 190
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	153, 226, 239, 245
MseI	TTAA	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	2 cut(s)	127, 168
MspR9I	CCNGG	6 cut(s)	6, 12, 127, 128, 169, 185
MvaI	CCWGG	3 cut(s)	6, 12, 185
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	3 cut(s)	127, 128, 169
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	3 cut(s)	131, 132, 221
NmeAIII	GCCGAG	2 cut(s)	222, 248
NmuCI	GTSAC	2 cut(s)	160, 190
PaeR7I	CTCGAG	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	2 cut(s)	130, 254
Psp5II	RGGWCCY	2 cut(s)	130, 254
Psp6I	CCWGG	3 cut(s)	4, 10, 183
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	3 cut(s)	4, 10, 183
PspN4I	GGNNCC	3 cut(s)	131, 132, 221
PspPI	GGNCC	6 cut(s)	8, 130, 170, 220, 235, 254
PspPPI	RGGWCCY	2 cut(s)	130, 254
PspXI	VCTCGAGB	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	268
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	6 cut(s)	8, 130, 170, 220, 235, 254
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	6 cut(s)	6, 12, 127, 128, 169, 185
SetI	ASST	9 cut(s)	48, 62, 91, 101, 205, 210, 231, 243, 256
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	3 cut(s)	8, 130, 254
SlaI	CTCGAG	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SsiI	CCGC	2 cut(s)	81, 165
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	6 cut(s)	4, 10, 125, 126, 167, 183
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	268
Tru9I	TTAA	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	160, 190
Tsp45I	GTSAC	2 cut(s)	160, 190
TspMI	CCCGGG	1 cut(s)	126
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	3 cut(s)	8, 130, 254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	126
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.